Gm12972 Gene Detail

Summary

• Symbol
  Gm12972
• Name
  predicted gene 12972

• Feature Type
  lncRNA gene
• IDs
  MGI:3650043
  NCBI Gene: 108168710
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:130513380-130515166 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 63.61 cM

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650043	lncRNA gene	Chr4:130511020-130515314 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006521	lincRNA gene	Chr4:132826792-132828578 (+)
A/J	MGP_AJ_G0006513	lincRNA gene	Chr4:127320884-127322670 (+)
AKR/J	MGP_AKRJ_G0006487	lincRNA gene	Chr4:130897080-130898866 (+)
BALB/cJ	MGP_BALBcJ_G0006487	lincRNA gene	Chr4:127936198-127937984 (+)
C3H/HeJ	MGP_C3HHeJ_G0006437	lincRNA gene	Chr4:131115428-131117214 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006653	lincRNA gene	Chr4:137619310-137621096 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005931	lincRNA gene	Chr4:120424848-120426692 (+)
CAST/EiJ	MGP_CASTEiJ_G0006369	lincRNA gene	Chr4:129156358-129158155 (+)
CBA/J	MGP_CBAJ_G0006420	lincRNA gene	Chr4:141121352-141123138 (+)
DBA/2J	MGP_DBA2J_G0006442	lincRNA gene	Chr4:127751188-127752974 (+)
FVB/NJ	MGP_FVBNJ_G0006464	lincRNA gene	Chr4:126565465-126567235 (+)
LP/J	MGP_LPJ_G0006522	lincRNA gene	Chr4:132974867-132976653 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006451	lincRNA gene	Chr4:145826623-145828409 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006657	lincRNA gene	Chr4:131270398-131272184 (+)
PWK/PhJ	MGP_PWKPhJ_G0006306	lincRNA gene	Chr4:124387405-124389193 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006215	lincRNA gene	Chr4:127126522-127127959 (+)
WSB/EiJ	MGP_WSBEiJ_G0006415	lincRNA gene	Chr4:131413212-131414998 (+)

Homology

• Gene Tree
  Gm12972
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12972
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000086548 (Evidence)
• NCBI Gene
  108168710

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086548	Ensembl Gene Model | MGI Sequence Detail	1787	C57BL/6J
transcript	ENSMUST00000152986	Ensembl | MGI Sequence Detail	1006	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 4
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8