Gm13731 Pseudogene Detail

Summary

• Symbol
  Gm13731
• Name
  predicted gene 13731

• Feature Type
  pseudogene
• IDs
  MGI:3650010
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:87164146-87164341 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 49.86 cM

Strain
Comparison

• SNPs within 2kb
  45 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650010	pseudogene	Chr2:87164146-87164341 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011749	pseudogene	Chr2:88361545-88361740 (+)
A/J	MGP_AJ_G0011743	pseudogene	Chr2:84825719-84825914 (+)
AKR/J	MGP_AKRJ_G0011710	pseudogene	Chr2:87151710-87151905 (+)
BALB/cJ	MGP_BALBcJ_G0011722	pseudogene	Chr2:85037680-85037875 (+)
C3H/HeJ	MGP_C3HHeJ_G0011607	pseudogene	Chr2:87385752-87386624 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012019	pseudogene	Chr2:91297172-91300926 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010947	pseudogene	Chr3:81645943-81647551 (-)
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011582	pseudogene	Chr2:94338065-94338260 (+)
DBA/2J	MGP_DBA2J_G0011634	pseudogene	Chr2:84436924-84437119 (+)
FVB/NJ	MGP_FVBNJ_G0011640	pseudogene	Chr2:83535006-83535201 (+)
LP/J	MGP_LPJ_G0011705	pseudogene	Chr2:88388156-88388351 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011641	pseudogene	Chr2:97076451-97077393 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012015	pseudogene	Chr2:87279854-87280049 (+)
PWK/PhJ	MGP_PWKPhJ_G0011247	pseudogene	Chr2:84334322-84334517 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011072	pseudogene	Chr2:87305821-87306015 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm13731
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13731
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18

• Ensembl
  ENSMUSG00000081907 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081907	Ensembl Gene Model | MGI Sequence Detail	196	C57BL/6J
transcript	ENSMUST00000117332	Ensembl | MGI Sequence Detail	196	Not Applicable

References

• Summaries
  All 8

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087