Gm12829 Gene Detail

Summary

• Symbol
  Gm12829
• Name
  predicted gene 12829
• Synonyms
  Hrtlincr4

• Feature Type
  lncRNA gene
• IDs
  MGI:3650003
  NCBI Gene: 102636500
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:114537537-114540601 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 52.24 cM

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3650003	lncRNA gene	Chr4:114537537-114544806 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0006492	lincRNA gene	Chr4:115432333-115439114 (+)
A/J	MGP_AJ_G0006484	lincRNA gene	Chr4:111016901-111023670 (+)
AKR/J	MGP_AKRJ_G0006458	lincRNA gene	Chr4:113320346-113327133 (+)
BALB/cJ	MGP_BALBcJ_G0006458	lincRNA gene	Chr4:111660548-111667315 (+)
C3H/HeJ	MGP_C3HHeJ_G0006408	lincRNA gene	Chr4:114939067-114946002 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0006624	lincRNA gene	Chr4:119899920-119906693 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005904	lincRNA gene	Chr4:105132168-105138898 (+)
CAST/EiJ	MGP_CASTEiJ_G0006340	lincRNA gene	Chr4:112352186-112358925 (+)
CBA/J	MGP_CBAJ_G0006391	lincRNA gene	Chr4:123015543-123022310 (+)
DBA/2J	MGP_DBA2J_G0006413	lincRNA gene	Chr4:111675285-111682060 (+)
FVB/NJ	MGP_FVBNJ_G0006435	lincRNA gene	Chr4:110139027-110146398 (+)
LP/J	MGP_LPJ_G0006493	lincRNA gene	Chr4:115635194-115644047 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0006422	lincRNA gene	Chr4:128158403-128165180 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0006628	lincRNA gene	Chr4:114566187-114572968 (+)
PWK/PhJ	MGP_PWKPhJ_G0006277	lincRNA gene	Chr4:108454017-108460930 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0006188	lincRNA gene	Chr4:110961433-110970059 (+)
WSB/EiJ	MGP_WSBEiJ_G0006386	lincRNA gene	Chr4:114350850-114357632 (+)

Homology

• Gene Tree
  Gm12829
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  7 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  4 involving Gm12829
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  711
• Tissues
  4
• cDNA Data
  2
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  2

• Ensembl
  ENSMUSG00000085870 (Evidence)
• NCBI Gene
  102636500

Representative Sequences			Length	Strain/Species
genomic	102636500	NCBI Gene Model | MGI Sequence Detail	3065	C57BL/6J
transcript	AK050995	GenBank | ENA | DDBJ | MGI Sequence Detail	2433	C57BL/6J

Molecular
Reagents

• All nucleic 4

  cDNA 2

  Primer pair 2

References

• Summaries
  All 13

  Developmental Gene Expression 1

  Phenotypes 7
• Earliest
  J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
• Latest
  J:284183 George MR, et al., Minimal in vivo requirements for developmentally regulated cardiac long intergenic non-coding RNAs. Development. 2019 Dec 9;146(23):dev185314

TSS for Gm12829:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38419	Chr4:114537966-114537979 (+)	436 bp