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Gm12648 Gene Detail
Summary
  • Symbol
    Gm12648
  • Name
    predicted gene 12648
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3649948
    NCBI Gene: 108168967
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:93977813-94313825 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 43.27 cM
Strain
Comparison
more
  • SNPs within 2kb
    1674 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649948
 lncRNA gene Chr4:93976375-94313825 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006466
 lincRNA gene Chr4:94144860-94476209 (-)
A/J MGP_AJ_G0006458
 lincRNA gene Chr4:90840673-91167897 (-)
AKR/J MGP_AKRJ_G0006432
 lincRNA gene Chr4:92992959-93327842 (-)
BALB/cJ MGP_BALBcJ_G0006432
 lincRNA gene Chr4:91084947-91417899 (-)
C3H/HeJ MGP_C3HHeJ_G0006382
 lincRNA gene Chr4:93833937-94171542 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006598
 lincRNA gene Chr4:97743259-98083617 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0006315
 lincRNA gene Chr4:91708839-92038887 (-)
CBA/J MGP_CBAJ_G0006365
 lincRNA gene Chr4:100721555-101073607 (-)
DBA/2J MGP_DBA2J_G0006387
 lincRNA gene Chr4:90614771-90943050 (-)
FVB/NJ MGP_FVBNJ_G0006409
 lincRNA gene Chr4:89482473-89808487 (-)
LP/J MGP_LPJ_G0006468
 lincRNA gene Chr4:94467444-94799090 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006396
 lincRNA gene Chr4:106475522-106832152 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006602
 lincRNA gene Chr4:93282022-93621109 (-)
PWK/PhJ MGP_PWKPhJ_G0006252
 lincRNA gene Chr4:88774058-89105610 (-)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0006361
 lincRNA gene Chr4:93441170-93776322 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    2
  • Radiation induced
    1
  • Genomic Mutations
    3 involving Gm12648
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    1
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000085931 Ensembl Gene Model | MGI Sequence Detail 336013 C57BL/6J ±  kb
transcript ENSMUST00000126270 Ensembl | MGI Sequence Detail 656 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 10
    Phenotypes 3
  • Earliest
    J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
  • Latest
    J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory