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Gm12649 Gene Detail
Summary
  • Symbol
    Gm12649
  • Name
    predicted gene 12649
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3649947
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr4:93341495-93559307 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 43.27 cM
Strain
Comparison
more
  • SNPs within 2kb
    1790 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649947
 lncRNA gene Chr4:93341495-93559307 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006465
 lincRNA gene Chr4:93465724-93696122 (-)
A/J MGP_AJ_G0006457
 lincRNA gene Chr4:90235144-90458793 (-)
AKR/J MGP_AKRJ_G0006431
 lincRNA gene Chr4:92366734-92589338 (-)
BALB/cJ MGP_BALBcJ_G0006431
 lincRNA gene Chr4:90485211-90701754 (-)
C3H/HeJ MGP_C3HHeJ_G0006381
 lincRNA gene Chr4:93220987-93425811 (-)
C57BL/6NJ MGP_C57BL6NJ_G0006597
 lincRNA gene Chr4:97060636-97298189 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0005880
 lincRNA gene Chr4:85774351-85978017 (-)
CAST/EiJ MGP_CASTEiJ_G0006314
 lincRNA gene Chr4:91081977-91303684 (-)
CBA/J MGP_CBAJ_G0006364
 lincRNA gene Chr4:100037004-100281069 (-)
DBA/2J MGP_DBA2J_G0006386
 lincRNA gene Chr4:89992777-90208813 (-)
FVB/NJ MGP_FVBNJ_G0006408
 lincRNA gene Chr4:88864368-89073747 (-)
LP/J MGP_LPJ_G0006467
 lincRNA gene Chr4:93790296-94033110 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006395
 lincRNA gene Chr4:105720525-105986070 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0006601
 lincRNA gene Chr4:92632890-92859071 (-)
PWK/PhJ MGP_PWKPhJ_G0006251
 lincRNA gene Chr4:88178074-88391572 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006163
 lincRNA gene Chr4:90045988-90270343 (-)
WSB/EiJ MGP_WSBEiJ_G0006360
 lincRNA gene Chr4:92792194-93017429 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Gene trapped
    2
  • Radiation induced
    1
  • Genomic Mutations
    4 involving Gm12649
  • Find Mice (IMSR)
    0 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    20
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000084833 Ensembl Gene Model | MGI Sequence Detail 217813 C57BL/6J ±  kb
transcript ENSMUST00000137509 Ensembl | MGI Sequence Detail 581 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 10
    Phenotypes 6
  • Earliest
    J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
  • Latest
    J:235276 Saito M, et al., Identification of Stmm3 locus conferring resistance to late-stage chemically induced skin papillomas on mouse chromosome 4 by congenic mapping and allele-specific alteration analysis. Exp Anim. 2014;63(3):339-48
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/09/2024
MGI 6.23 		The Jackson Laboratory