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Pramef6 Gene Detail
Summary
  • Symbol
    Pramef6
  • Name
    PRAME family member 6
  • Synonyms
    Gm13099
  • Feature Type
    protein coding gene
  • IDs
    MGI:3649940
    NCBI Gene: 195555
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr4:143894237-143900380 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 4, 77.98 cM
Strain
Comparison
more
  • SNPs within 2kb
    132 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649940
protein coding gene Chr4:143894237-143900380 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029073
protein coding gene Chr4:146744560-146747452 (+)
A/J MGP_AJ_G0029038
protein coding gene Chr4:140609456-140612980 (+)
AKR/J MGP_AKRJ_G0028991
protein coding gene Chr4:144620506-144623510 (+)
BALB/cJ MGP_BALBcJ_G0029058
protein coding gene Chr4:141249268-141261874 (+)
C3H/HeJ MGP_C3HHeJ_G0028776
protein coding gene Chr4:145004349-145014416 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029500
protein coding gene Chr4:151989747-151993337 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0028737
protein coding gene Chr4:156571312-156574414 (+)
DBA/2J MGP_DBA2J_G0028895
protein coding gene Chr4:141347451-141352578 (+)
FVB/NJ MGP_FVBNJ_G0028854
protein coding gene Chr4:140062565-140073010 (+)
LP/J MGP_LPJ_G0028982
protein coding gene Chr4:146767623-146770515 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0028886
protein coding gene Chr4:160516151-160523485 (-)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0027754
protein coding gene Chr4:140810499-141091886 (+)
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 195555 NCBI Gene Model | MGI Sequence Detail 6144 C57BL/6J ±  kb
transcript NM_001085414 RefSeq | MGI Sequence Detail 1487 Not Specified  
polypeptide NP_001078883 RefSeq | MGI Sequence Detail 469 Not Specified  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR032675 Leucine-rich repeat domain superfamily
    IPR026271 PRAME family
References
more
  • Summaries
    All 13
    Gene Ontology 1
    Phenotypes 4
  • Earliest
    J:84714 Nishijima I, et al., Two new balancer chromosomes on mouse chromosome 4 to facilitate functional annotation of human chromosome 1p. Genesis. 2003 Jul;36(3):142-8
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
11/26/2019
MGI 6.14
The Jackson Laboratory