Gm12592 MGI Mouse Gene Detail - MGI:3649892

Symbol

Gm12592
Name

predicted gene 12592

Feature Type

lncRNA gene
IDs

MGI:3649892
NCBI Gene: 791413
Alliance

gene page
Transcription Start Sites

3 TSS

Sequence Map

Chr11:3255420-3281190 bp, - strand
From NCBI annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 11, 2.32 cM

SNPs within 2kb

532 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649892	lncRNA gene	Chr11:3255420-3282293 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015145	unclassified non-coding RNA gene	Chr11:154830-182798 (-)
A/J	MGP_AJ_G0015119	unclassified non-coding RNA gene	Chr11:218437-244807 (-)
AKR/J	MGP_AKRJ_G0015082	unclassified non-coding RNA gene	Chr11:224042-252168 (-)
BALB/cJ	MGP_BALBcJ_G0015082	unclassified non-coding RNA gene	Chr11:191159-216874 (-)
C3H/HeJ	MGP_C3HHeJ_G0014905	unclassified non-coding RNA gene	Chr11:167114-192693 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015538	unclassified non-coding RNA gene	Chr11:220855-250893 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013284	unclassified non-coding RNA gene	Chr11:134979-161560 (-)
CAST/EiJ	MGP_CASTEiJ_G0014459	unclassified non-coding RNA gene	Chr11:114716-143395 (-)
CBA/J	MGP_CBAJ_G0014884	unclassified non-coding RNA gene	Chr11:391512-417193 (-)
DBA/2J	MGP_DBA2J_G0014977	unclassified non-coding RNA gene	Chr11:140688-166255 (-)
FVB/NJ	MGP_FVBNJ_G0014988	unclassified non-coding RNA gene	Chr11:165986-192156 (-)
LP/J	MGP_LPJ_G0015059	unclassified non-coding RNA gene	Chr11:261269-289594 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015015	unclassified non-coding RNA gene	Chr11:144658-173000 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015577	unclassified non-coding RNA gene	Chr11:230058-258666 (-)
PWK/PhJ	MGP_PWKPhJ_G0014251	unclassified non-coding RNA gene	Chr11:114096-140996 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014039	unclassified non-coding RNA gene	Chr11:187412-220023 (-)
WSB/EiJ	MGP_WSBEiJ_G0014562	unclassified non-coding RNA gene	Chr11:110816-137113 (-)

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Gene Tree

Gm12592

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

1

Tissue x Stage Matrix

Other Mouse Links

GEO

Expression Atlas

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All Sequences

26
RefSeq

1
UniProt

1

Ensembl

ENSMUSG00000053263 (Evidence)
NCBI Gene

791413

			Length	Strain/Species	Flank
genomic	791413	NCBI Gene Model \| MGI Sequence Detail	25771	C57BL/6J	± kb
transcript	NR_165248	RefSeq \| MGI Sequence Detail	2972	C57BL/6
polypeptide	Q8CE53	UniProt \| EBI \| MGI Sequence Detail	120	Not Applicable

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UniProt

1 Sequence

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All nucleic 1

cDNA 1

Summaries

All 9
Earliest

J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
Latest

J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12592:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr106461	Chr11:3282277-3282301 (-)	-1,099 bp
Tssr106460	Chr11:3282253-3282276 (-)	-1,075 bp
Tssr106459	Chr11:3281180-3281201 (-)	-1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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