Gm11914 Pseudogene Detail

Summary

• Symbol
  Gm11914
• Name
  predicted gene 11914

• Feature Type
  pseudogene
• IDs
  MGI:3649889
  NCBI Gene: 100040691
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:27867149-27867655 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 11.38 cM

Strain
Comparison

• SNPs within 2kb
  10 from dbSNP Build 142
• Strain Annotations
  8

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649889	pseudogene	Chr4:27867149-27867745 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011239	pseudogene	Chr16:11064073-11064579 (-)
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0010069	pseudogene	Chr16:10531833-10532340 (-)
CAST/EiJ	MGP_CASTEiJ_G0010914	pseudogene	Chr16:11019592-11020099 (-)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0011214	pseudogene	Chr16:10957803-10958309 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0010791	pseudogene	Chr16:10706316-10706823 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0010614	pseudogene	Chr16:10870081-10870599 (-)
WSB/EiJ	MGP_WSBEiJ_G0010962	pseudogene	Chr16:10901360-10901866 (-)

Homology

• Gene Tree
  Gm11914
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm11914
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  12
• RefSeq
  1

• Ensembl
  ENSMUSG00000082674 (Evidence)
• NCBI Gene
  100040691

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000082674	Ensembl Gene Model | MGI Sequence Detail	507	C57BL/6J
transcript	ENSMUST00000117094	Ensembl | MGI Sequence Detail	507	Not Applicable

References

• Summaries
  All 6

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm11914:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr41127	Chr4:27867587-27867621 (-)	51 bp