Gm11830 Pseudogene Detail

Summary

• Symbol
  Gm11830
• Name
  predicted gene 11830

• Feature Type
  pseudogene
• IDs
  MGI:3649825
  NCBI Gene: 666897
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:11144710-11145270 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 5.02 cM

Strain
Comparison

• SNPs within 2kb
  31 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649825	pseudogene	Chr4:11144710-11145270 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012510	pseudogene	Chr4:7791290-7791850 (+)
A/J	MGP_AJ_G0012504	pseudogene	Chr4:7661218-7661780 (+)
AKR/J	MGP_AKRJ_G0012468	pseudogene	Chr4:7756997-7757557 (+)
BALB/cJ	MGP_BALBcJ_G0012487	pseudogene	Chr4:7583362-7583922 (+)
C3H/HeJ	MGP_C3HHeJ_G0012349	pseudogene	Chr4:7907744-7908418 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012802	pseudogene	Chr4:8204650-8205210 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011153	pseudogene	Chr4:7187901-7188468 (+)
CAST/EiJ	MGP_CASTEiJ_G0012117	pseudogene	Chr4:7733555-7734112 (+)
CBA/J	MGP_CBAJ_G0012329	pseudogene	Chr4:8395343-8395903 (+)
DBA/2J	MGP_DBA2J_G0012383	pseudogene	Chr4:7546054-7547442 (+)
FVB/NJ	MGP_FVBNJ_G0012384	pseudogene	Chr4:7382052-7382612 (+)
LP/J	MGP_LPJ_G0012457	pseudogene	Chr4:7869208-7869768 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012392	pseudogene	Chr4:8602538-8603100 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012804	pseudogene	Chr4:7757339-7758387 (+)
PWK/PhJ	MGP_PWKPhJ_G0011949	pseudogene	Chr4:7543124-7543681 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011771	pseudogene	Chr4:7676766-7677330 (+)
WSB/EiJ	MGP_WSBEiJ_G0012141	pseudogene	Chr4:7821852-7822412 (+)

Homology

• Gene Tree
  Gm11830
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081490 (Evidence)
• NCBI Gene
  666897

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081490	Ensembl Gene Model | MGI Sequence Detail	561	C57BL/6J
transcript	ENSMUST00000120175	Ensembl | MGI Sequence Detail	561	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;