Rps11-ps3 Pseudogene Detail

Summary

• Symbol
  Rps11-ps3
• Name
  ribosomal protein S11, pseudogene 3
• Synonyms
  Gm11828

• Feature Type
  pseudogene
• IDs
  MGI:3649802
  NCBI Gene: 383992
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:10946608-10947093 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 4.86 cM

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649802	pseudogene	Chr4:10946582-10947118 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012508	pseudogene	Chr4:7582809-7583294 (+)
A/J	MGP_AJ_G0012502	pseudogene	Chr4:7460430-7460915 (+)
AKR/J	MGP_AKRJ_G0012466	pseudogene	Chr4:7544475-7544960 (+)
BALB/cJ	MGP_BALBcJ_G0012485	pseudogene	Chr4:7382301-7382786 (+)
C3H/HeJ	MGP_C3HHeJ_G0012347	pseudogene	Chr4:7695323-7695808 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012800	pseudogene	Chr4:7995497-7995982 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012115	pseudogene	Chr4:7525114-7525597 (+)
CBA/J	MGP_CBAJ_G0012327	pseudogene	Chr4:8164808-8165293 (+)
DBA/2J	MGP_DBA2J_G0012381	pseudogene	Chr4:7343123-7343608 (+)
FVB/NJ	MGP_FVBNJ_G0012382	pseudogene	Chr4:7178405-7178890 (+)
LP/J	MGP_LPJ_G0012455	pseudogene	Chr4:7661366-7661851 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012390	pseudogene	Chr4:8360206-8360691 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012802	pseudogene	Chr4:7549013-7549498 (+)
PWK/PhJ	MGP_PWKPhJ_G0011947	pseudogene	Chr4:7335730-7336866 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011769	pseudogene	Chr4:7471062-7471545 (+)
WSB/EiJ	MGP_WSBEiJ_G0012139	pseudogene	Chr4:7601511-7601996 (+)

Homology

• Gene Tree
  Rps11-ps3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000081715 (Evidence)
• NCBI Gene
  383992

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081715	Ensembl Gene Model | MGI Sequence Detail	486	C57BL/6J
transcript	ENSMUST00000117608	Ensembl | MGI Sequence Detail	486	Not Applicable

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14

TSS for Rps11-ps3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36461	Chr4:10946584-10946598 (+)	-17 bp