Gm12586 Pseudogene Detail

Summary

• Symbol
  Gm12586
• Name
  predicted gene 12586

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649692
  NCBI Gene: 108167874
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr11:121746317-121750681 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 87.92 cM

Strain
Comparison

• SNPs within 2kb
  50 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649692	pseudogene	Chr11:121746317-121752053 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0040001	pseudogene	Chr11:126462309-126473667 (+)
A/J	MGP_AJ_G0040010	pseudogene	Chr11:120763238-120767692 (+)
AKR/J	MGP_AKRJ_G0039929	pseudogene	Chr11:124430615-124435153 (+)
BALB/cJ	MGP_BALBcJ_G0039989	pseudogene	Chr11:121143513-121147967 (+)
C3H/HeJ	MGP_C3HHeJ_G0039634	pseudogene	Chr11:124759832-124764286 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040568	pseudogene	Chr11:130244532-130249070 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038744	pseudogene	Chr11:126253282-126257720 (+)
CBA/J	MGP_CBAJ_G0039603	pseudogene	Chr11:135308731-135313185 (+)
DBA/2J	MGP_DBA2J_G0039799	pseudogene	Chr11:120155942-120160396 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0039837	pseudogene	Chr11:126705512-126709966 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039748	pseudogene	Chr11:134087087-134093333 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040663	pseudogene	Chr11:125123732-125128186 (+)
PWK/PhJ	MGP_PWKPhJ_G0038421	pseudogene	Chr11:121589565-121598880 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038147	pseudogene	Chr11:124923293-124929740 (+)
WSB/EiJ	MGP_WSBEiJ_G0038964	pseudogene	Chr11:125082509-125086963 (+)

Homology

• Gene Tree
  Gm12586
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  2

• Ensembl
  ENSMUSG00000084401 (Evidence)
• NCBI Gene
  108167874

Representative Sequences			Length	Strain/Species
genomic	108167874	NCBI Gene Model | MGI Sequence Detail	4365	C57BL/6J
transcript	XM_036157119	RefSeq | MGI Sequence Detail	2998	C57BL/6J
polypeptide	XP_036013012	RefSeq | MGI Sequence Detail	244	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;