Gm12771 Pseudogene Detail

Summary

• Symbol
  Gm12771
• Name
  predicted gene 12771

• Feature Type
  pseudogene
• IDs
  MGI:3649635
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:33267581-33267715 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 19.36 cM

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649635	pseudogene	Chr7:33267581-33267715 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0013874	pseudogene	Chr7:31857132-31857266 (+)
AKR/J	MGP_AKRJ_G0013814	pseudogene	Chr7:32582764-32582898 (+)
BALB/cJ	MGP_BALBcJ_G0013841	pseudogene	Chr7:32126636-32126770 (+)
C3H/HeJ	MGP_C3HHeJ_G0013671	pseudogene	Chr7:33555367-33555501 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0014258	pseudogene	Chr7:34475517-34475651 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013339	pseudogene	Chr7:24081136-24081270 (+)
CBA/J	MGP_CBAJ_G0013646	pseudogene	Chr7:35331106-35331240 (+)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0013725	pseudogene	Chr7:31716933-31717067 (+)
LP/J	MGP_LPJ_G0013800	pseudogene	Chr7:32391349-32391483 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013749	pseudogene	Chr7:34436596-34436730 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0014451	pseudogene	Chr8:38580867-38581001 (-)
PWK/PhJ	MGP_PWKPhJ_G0013149	pseudogene	Chr7:24757558-24757692 (+)
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12771
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  15

• Ensembl
  ENSMUSG00000081155 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081155	Ensembl Gene Model | MGI Sequence Detail	135	C57BL/6J
transcript	ENSMUST00000120246	Ensembl | MGI Sequence Detail	135	Not Applicable

References

• Summaries
  All 3
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;