Gm12816 Pseudogene Detail

Summary

• Symbol
  Gm12816
• Name
  predicted gene 12816

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649628
  NCBI Gene: 433745
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr4:112812272-112813483 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 51.53 cM

Strain
Comparison

• SNPs within 2kb
  174 from dbSNP Build 142
• Strain Annotations
  5

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649628	pseudogene	Chr4:112812205-112813489 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	ENSMUSG00215036109	pseudogene	Chr4:108182292-108183503 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011706	pseudogene	Chr5:98192925-98194071 (-)
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	ENSMUSG00185051109	pseudogene	Chr4:108753476-108753486 (-)
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	ENSMUSG00225011717	pseudogene	Chr4:116999377-117000588 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm12816
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  4 involving Gm12816
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  10
• RefSeq
  2

• Ensembl
  ENSMUSG00000083011 (Evidence)
• NCBI Gene
  433745

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083011	Ensembl Gene Model | MGI Sequence Detail	1212	C57BL/6J
transcript	ENSMUST00000118069	Ensembl | MGI Sequence Detail	1212	Not Applicable
polypeptide	XP_036020517	RefSeq | MGI Sequence Detail	403	C57BL/6J

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:262448 Narita T, et al., Mice lacking all of the Skint family genes. Int Immunol. 2018 Apr 26;
• Latest
  J:323863 McKenzie DR, et al., Normality sensing licenses local T cells for innate-like tissue surveillance. Nat Immunol. 2022 Mar;23(3):411-422