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Trav6-3 Gene Detail
Summary
  • Symbol
    Trav6-3
  • Name
    T cell receptor alpha variable 6-3
  • Feature Type
    gene segment
  • IDs
    MGI:3649610
    NCBI Gene: 328483
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr14:53428761-53430377 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.36 cM
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649610
gene segment Chr14:53428711-53430377 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002526
gene segment Chr14:46768216-46769884 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002483
gene segment Chr14:47211637-47213302 (+)
BALB/cJ MGP_BALBcJ_G0002512
gene segment Chr14:46375287-46376955 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0002640
gene segment Chr14:49673112-49674770 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002220
gene segment Chr14:44583499-44583799 (+)
CAST/EiJ MGP_CASTEiJ_G0002426
gene segment Chr14:43848930-43849202 (+)
CBA/J MGP_CBAJ_G0002458
gene segment Chr14:50339966-50341634 (+)
DBA/2J MGP_DBA2J_G0002467
gene segment Chr14:45318025-45319690 (+)
FVB/NJ MGP_FVBNJ_G0002481
gene segment Chr14:44892162-45622802 (+)
LP/J MGP_LPJ_G0002522
gene segment Chr14:47418278-47419943 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002480
gene segment Chr14:50576100-50587261 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0002661
gene segment Chr14:47266301-47267969 (+)
PWK/PhJ MGP_PWKPhJ_G0002408
gene segment Chr14:41993010-41993282 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002344
gene segment Chr14:42591294-42592964 (+)
WSB/EiJ MGP_WSBEiJ_G0002461
gene segment Chr14:46860566-46862235 (+)



Homology
less
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 328483 NCBI Gene Model | MGI Sequence Detail 1617 C57BL/6J ±  kb
transcript AK134090 GenBank | EMBL | DDBJ | MGI Sequence Detail 1171 C57BL/6J  
polypeptide Q5R1E6 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
Molecular
Reagents
less
  • All nucleic 1
    cDNA 1
References
more
  • Summaries
    All 13
    Gene Ontology 1
  • Earliest
    J:86383 Yoshida Y, et al., Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains. J Biol Chem. 2003 Oct 31;278(44):43877-84
  • Latest
    J:225833 Preston GC, et al., Single cell tuning of Myc expression by antigen receptor signal strength and interleukin-2 in T lymphocytes. EMBO J. 2015 Aug 4;34(15):2008-24

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
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last database update
01/14/2020
MGI 6.14
The Jackson Laboratory