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Trav8-1 Gene Detail
Summary
  • Symbol
    Trav8-1
  • Name
    T cell receptor alpha variable 8-1
  • Synonyms
    Gm13950
  • Feature Type
    gene segment
  • IDs
    MGI:3649608
    NCBI Gene: 674098
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr14:53469756-53470231 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.38 cM
Strain
Comparison
more
  • SNPs within 2kb
    20 from dbSNP Build 142
  • Strain Annotations
    14
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649608
gene segment Chr14:53469756-53470232 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002555
gene segment Chr14:47386232-47386717 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002512
gene segment Chr14:48059699-48060184 (+)
BALB/cJ MGP_BALBcJ_G0002496
gene segment Chr14:45704609-45705094 (+)
C3H/HeJ MGP_C3HHeJ_G0002471
gene segment Chr14:47010183-47010668 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002213
gene segment Chr14:31369174-31369657 (+)
CAST/EiJ MGP_CASTEiJ_G0002437
gene segment Chr14:44078818-44079301 (+)
CBA/J MGP_CBAJ_G0002463
gene segment Chr14:50390416-50390901 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0002508
gene segment Chr14:45662368-45662853 (+)
LP/J MGP_LPJ_G0002548
gene segment Chr14:48259222-48259707 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0002456
gene segment Chr14:49844801-49845286 (+)
NZO/HlLtJ no annotation
PWK/PhJ MGP_PWKPhJ_G0002427
gene segment Chr14:42742480-42742965 (+)
SPRET/EiJ MGP_SPRETEiJ_G0002356
gene segment Chr14:43080114-43080599 (+)
WSB/EiJ MGP_WSBEiJ_G0002466
gene segment Chr14:46899434-46899919 (+)



Homology
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Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 674098 NCBI Gene Model | MGI Sequence Detail 476 C57BL/6J ±  kb
polypeptide A0A075B641 UniProt | EBI | MGI Sequence Detail 109 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 8
    Gene Ontology 1
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
07/29/2020
MGI 6.15
The Jackson Laboratory