Gm12475 Pseudogene Detail

Summary

• Symbol
  Gm12475
• Name
  predicted gene 12475

• Feature Type
  pseudogene
• IDs
  MGI:3649584
  NCBI Gene: 666724
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:52360823-52362211 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.31 cM

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649584	pseudogene	Chr4:52360700-52362264 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012654	pseudogene	Chr4:50938993-50940381 (-)
A/J	MGP_AJ_G0012642	pseudogene	Chr4:48993425-48994813 (-)
AKR/J	MGP_AKRJ_G0012612	pseudogene	Chr4:50333606-50334994 (-)
BALB/cJ	MGP_BALBcJ_G0012625	pseudogene	Chr4:49151240-49152628 (-)
C3H/HeJ	MGP_C3HHeJ_G0012486	pseudogene	Chr4:50882276-50883664 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012951	pseudogene	Chr4:52806511-52807899 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011259	pseudogene	Chr4:45998072-45999456 (-)
CAST/EiJ	MGP_CASTEiJ_G0012243	pseudogene	Chr4:50497241-50498629 (-)
CBA/J	MGP_CBAJ_G0012466	pseudogene	Chr4:54633768-54635156 (-)
DBA/2J	MGP_DBA2J_G0012524	pseudogene	Chr4:48959513-48960901 (-)
FVB/NJ	MGP_FVBNJ_G0012524	pseudogene	Chr4:48192249-48193637 (-)
LP/J	MGP_LPJ_G0012595	pseudogene	Chr4:51035783-51037171 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012532	pseudogene	Chr4:57844327-57845715 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012954	pseudogene	Chr4:50570754-50572142 (-)
PWK/PhJ	MGP_PWKPhJ_G0012070	pseudogene	Chr4:48913398-48914779 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011884	pseudogene	Chr4:49863278-49864654 (-)
WSB/EiJ	MGP_WSBEiJ_G0012265	pseudogene	Chr4:50458130-50459518 (-)

Homology

• Gene Tree
  Gm12475
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000083338 (Evidence)
• NCBI Gene
  666724

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083338	Ensembl Gene Model | MGI Sequence Detail	1389	C57BL/6J
transcript	ENSMUST00000119476	Ensembl | MGI Sequence Detail	1389	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;