Gm13624 Pseudogene Detail

Summary

• Symbol
  Gm13624
• Name
  predicted gene 13624

• Feature Type
  pseudogene
• IDs
  MGI:3649579
  NCBI Gene: 433432
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:69629495-69629956 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 40.95 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  12

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649579	pseudogene	Chr2:69629018-69630028 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011683	pseudogene	Chr2:67099532-67100042 (-)
AKR/J	MGP_AKRJ_G0011648	pseudogene	Chr2:68911001-68911462 (-)
BALB/cJ	MGP_BALBcJ_G0011664	pseudogene	Chr2:67263098-67263559 (-)
C3H/HeJ	MGP_C3HHeJ_G0011550	pseudogene	Chr2:69149894-69151080 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012147	pseudogene	Chr7:38911975-38912439 (-)
CAST/EiJ	MGP_CASTEiJ_G0013352	pseudogene	Chr7:31253527-31253993 (-)
CBA/J	MGP_CBAJ_G0011523	pseudogene	Chr2:74556316-74556960 (-)
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0011581	pseudogene	Chr2:66112847-66113308 (-)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0011579	pseudogene	Chr2:76619712-76620173 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011952	pseudogene	Chr2:69005646-69006107 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011366	pseudogene	Chr2:69433177-69433641 (-)

Homology

• Gene Tree
  Gm13624
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm13624
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000081857 (Evidence)
• NCBI Gene
  433432

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081857	Ensembl Gene Model | MGI Sequence Detail	462	C57BL/6J
transcript	ENSMUST00000120263	Ensembl | MGI Sequence Detail	462	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm13624:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24450	Chr2:69630031-69630032 (-)	-76 bp