Gm13651 Pseudogene Detail

Summary

• Symbol
  Gm13651
• Name
  predicted gene 13651

• Feature Type
  pseudogene
• IDs
  MGI:3649524
  NCBI Gene: 623706
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:77121675-77122784 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 45.94 cM

Strain
Comparison

• SNPs within 2kb
  30 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649524	pseudogene	Chr2:77121371-77123274 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011709	pseudogene	Chr2:77720950-77721901 (+)
A/J	MGP_AJ_G0011703	pseudogene	Chr2:74699403-74712832 (+)
AKR/J	MGP_AKRJ_G0011670	pseudogene	Chr2:76703377-76704802 (+)
BALB/cJ	MGP_BALBcJ_G0011684	pseudogene	Chr2:74886764-74887873 (+)
C3H/HeJ	MGP_C3HHeJ_G0011570	pseudogene	Chr2:76920245-76921354 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011978	pseudogene	Chr2:80014616-80015725 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014190	pseudogene	ChrX:101857397-101858566 (+)
CBA/J	MGP_CBAJ_G0011545	pseudogene	Chr2:82958298-82961457 (+)
DBA/2J	MGP_DBA2J_G0011595	pseudogene	Chr2:74287884-74290718 (+)
FVB/NJ	MGP_FVBNJ_G0011601	pseudogene	Chr2:73677150-73679527 (+)
LP/J	MGP_LPJ_G0011665	pseudogene	Chr2:77600132-77606434 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011602	pseudogene	Chr2:84777919-84779364 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011974	pseudogene	Chr2:76828968-76830077 (+)
PWK/PhJ	MGP_PWKPhJ_G0013993	pseudogene	ChrX:99170657-99171833 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0013786	pseudogene	ChrX:102591399-102592573 (+)
WSB/EiJ	MGP_WSBEiJ_G0014270	pseudogene	ChrX:116002823-116003995 (+)

Homology

• Gene Tree
  Gm13651
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Targeted
  2
• Genomic Mutations
  3 involving Gm13651
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081611 (Evidence)
• NCBI Gene
  623706

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081611	Ensembl Gene Model | MGI Sequence Detail	1110	C57BL/6J
transcript	ENSMUST00000119086	Ensembl | MGI Sequence Detail	1110	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:269738 Guerreiro I, et al., Reorganisation of Hoxd regulatory landscapes during the evolution of a snake-like body plan. Elife. 2016 Aug 1;5:e16087

TSS for Gm13651:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr18509	Chr2:77121367-77121372 (+)	-305 bp