Gm12171 Gene Detail

Summary

• Symbol
  Gm12171
• Name
  predicted gene 12171

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:3649516
  NCBI Gene: 675689
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr11:46446782-46448905 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 27.99 cM

Strain
Comparison

• SNPs within 2kb
  223 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649516	lncRNA gene	Chr11:46435036-46448905 (+)
129S1/SvImJ	ENSMUSG00200040365	lncRNA gene	Chr11:43493791-43506625 (+)
A/J	ENSMUSG00195037751	lncRNA gene	Chr11:43437882-43450717 (+)
AKR/J	ENSMUSG00220039392	lncRNA gene	Chr11:43629582-43642441 (+)
BALB/cJ	ENSMUSG00180038875	lncRNA gene	Chr11:43427646-43440477 (+)
C3H/HeJ	ENSMUSG00175039822	lncRNA gene	Chr11:43469999-43482832 (+)
C57BL/6NJ	ENSMUSG00215038560	lncRNA gene	Chr11:43379258-43392123 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004733	lincRNA gene	Chr11:41738862-41756817 (-)
CAST/EiJ	ENSTCUG00005044840	lncRNA gene	Chr11:43160485-43173241 (+)
CBA/J	ENSMUSG00210030040	lncRNA gene	Chr11:43321114-43333944 (+)
DBA/2J	ENSMUSG00185029173	lncRNA gene	Chr11:43497701-43510561 (+)
FVB/NJ	ENSMUSG00205037917	lncRNA gene	Chr11:43431241-43443989 (+)
JF1/MsJ	ENSUMUG00000044106	lncRNA gene	Chr11:43757065-43769905 (+)
LP/J	ENSMUSG00230034329	lncRNA gene	Chr11:44647525-44660357 (+)
NOD/ShiLtJ	ENSMUSG00190043322	lncRNA gene	Chr11:43568185-43581041 (+)
NZO/HlLtJ	ENSMUSG00225036209	lncRNA gene	Chr11:46596229-46608983 (+)
PWK/PhJ	ENSLUMG00010036331	lncRNA gene	Chr11:43319707-43332569 (+)
SPRET/EiJ	ENSMSPG00010020142	lncRNA gene	Chr11:43946713-43967166 (+)
WSB/EiJ	ENSIUOG00005042086	lncRNA gene	Chr11:43313297-43326159 (+)

Homology

• Gene Tree
  Gm12171
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12171
• Incidental Mutations
  CvDC
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000086981 (Evidence)
• NCBI Gene
  675689

Representative Sequences			Length	Strain/Species
genomic	675689	NCBI Gene Model | MGI Sequence Detail	2124	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6