Gm13840 Gene Detail

Summary

• Symbol
  Gm13840
• Name
  predicted gene 13840

• Feature Type
  lncRNA gene
• IDs
  MGI:3649479
  NCBI Gene: 102639837
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:115653322-115654006 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 56.10 cM

Strain
Comparison

• SNPs within 2kb
  62 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649479	lncRNA gene	Chr5:115644934-115654054 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0037040	sense intronic lncRNA gene	Chr5:118411777-118412496 (+)
A/J	MGP_AJ_G0037028	sense intronic lncRNA gene	Chr5:113689872-113690556 (+)
AKR/J	MGP_AKRJ_G0036976	sense intronic lncRNA gene	Chr5:117338086-117338805 (+)
BALB/cJ	MGP_BALBcJ_G0037019	sense intronic lncRNA gene	Chr5:115086121-115086840 (+)
C3H/HeJ	MGP_C3HHeJ_G0036706	sense intronic lncRNA gene	Chr5:117849352-117850036 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0037532	sense intronic lncRNA gene	Chr5:122964375-122965059 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0035894	sense intronic lncRNA gene	Chr5:116786888-116787617 (+)
CBA/J	MGP_CBAJ_G0036681	sense intronic lncRNA gene	Chr5:127692614-127693298 (+)
DBA/2J	MGP_DBA2J_G0036856	sense intronic lncRNA gene	Chr5:113778683-113779402 (+)
FVB/NJ	MGP_FVBNJ_G0036806	sense intronic lncRNA gene	Chr5:112595683-112596402 (+)
LP/J	MGP_LPJ_G0036903	sense intronic lncRNA gene	Chr5:118966056-118966775 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0036813	sense intronic lncRNA gene	Chr5:131993459-131994143 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0037649	sense intronic lncRNA gene	Chr5:116813287-116814006 (+)
PWK/PhJ	MGP_PWKPhJ_G0035586	sense intronic lncRNA gene	Chr5:112424256-112424987 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0035395	sense intronic lncRNA gene	Chr5:114360059-114360802 (+)
WSB/EiJ	MGP_WSBEiJ_G0036094	sense intronic lncRNA gene	Chr5:117410533-117411233 (+)

Homology

• Gene Tree
  Gm13840
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm13840
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000086849 (Evidence)
• NCBI Gene
  102639837

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086849	Ensembl Gene Model | MGI Sequence Detail	685	C57BL/6J
transcript	ENSMUST00000149608	Ensembl | MGI Sequence Detail	256	Not Applicable

References

• Summaries
  All 11

  Phenotypes 5
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17