Gm12286 Pseudogene Detail

Summary

• Symbol
  Gm12286
• Name
  predicted gene 12286

• Feature Type
  pseudogene
• IDs
  MGI:3649467
  NCBI Gene: 100042799
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:63203136-63204137 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 39.36 cM

Strain
Comparison

• SNPs within 2kb
  120 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649467	pseudogene	Chr11:63202924-63204137 (-)
129S1/SvImJ	ENSMUSG00200037359	pseudogene	Chr11:60132132-60133133 (-)
A/J	ENSMUSG00195042646	pseudogene	Chr11:60176837-60177838 (-)
AKR/J	ENSMUSG00220050131	pseudogene	Chr11:60275419-60276420 (-)
BALB/cJ	ENSMUSG00180050545	pseudogene	Chr11:60217469-60218470 (-)
C3H/HeJ	ENSMUSG00175049621	pseudogene	Chr11:60193562-60194563 (-)
C57BL/6NJ	ENSMUSG00215040718	pseudogene	Chr11:59966488-59967489 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005046955	pseudogene	Chr11:59737742-59738743 (-)
CBA/J	ENSMUSG00210038939	pseudogene	Chr11:60026991-60027992 (-)
DBA/2J	ENSMUSG00185018525	pseudogene	Chr9:121254192-121255193 (+)
DBA/2J	ENSMUSG00185045501	pseudogene	Chr11:60213506-60214507 (-)
FVB/NJ	ENSMUSG00205052130	pseudogene	Chr11:60091662-60092663 (-)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230053913	pseudogene	Chr11:61353266-61354267 (-)
NOD/ShiLtJ	ENSMUSG00190052015	pseudogene	Chr11:60208590-60209591 (-)
NZO/HlLtJ	ENSMUSG00225047754	pseudogene	Chr11:63505406-63506407 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005040981	pseudogene	Chr11:60123781-60124782 (-)

Homology

• Gene Tree
  Gm12286
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12286
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000081600 (Evidence)
• NCBI Gene
  100042799

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081600	Ensembl Gene Model | MGI Sequence Detail	1002	C57BL/6J
transcript	ENSMUST00000119246	Ensembl | MGI Sequence Detail	1002	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12286:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr108445	Chr11:63204207-63204210 (-)	-72 bp