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Trav7d-5 Gene Detail
Summary
  • Symbol
    Trav7d-5
  • Name
    T cell receptor alpha variable 7D-5
  • Feature Type
    gene segment
  • IDs
    MGI:3649422
    NCBI Gene: 627273
  • Alliance
Location &
Maps
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  • Sequence Map
    Chr14:53073318-53073844 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 14, 27.11 cM
Strain
Comparison
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  • Strain Annotations
    12
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649422
gene segment Chr14:53073315-53073844 (+)
129S1/SvImJ MGP_129S1SvImJ_G0002558
gene segment Chr14:47435113-47435643 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0002524
gene segment Chr14:48183872-48184402 (+)
BALB/cJ MGP_BALBcJ_G0002514
gene segment Chr14:46480280-46480810 (+)
C3H/HeJ MGP_C3HHeJ_G0002485
gene segment Chr14:47862687-47863217 (+)
C57BL/6NJ MGP_C57BL6NJ_G0002643
gene segment Chr14:49795315-49795844 (+)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J MGP_CBAJ_G0002485
gene segment Chr14:51291354-51291884 (+)
DBA/2J MGP_DBA2J_G0002489
gene segment Chr14:46198650-46199180 (+)
FVB/NJ MGP_FVBNJ_G0002511
gene segment Chr14:45727252-45727782 (+)
LP/J no annotation
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0002664
gene segment Chr14:47371642-47372172 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0002367
gene segment Chr14:43146585-43147115 (+)
WSB/EiJ MGP_WSBEiJ_G0002489
gene segment Chr14:47706582-47707112 (+)



Homology
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  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Vertebrate Orthologs
    9
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV12-1, T cell receptor alpha variable 12-1
  • Synonyms
    TCRAV12S1, TCRAV2S3, TRAV121
  • Links
    NCBI Gene ID: 28674
    UniProt: A0A0B4J245

  • Chr Location
    14q11.2; chr14:21841243-21841774 (+)  GRCh38.p7

  • Human Ortholog
    TRAV12-2, T cell receptor alpha variable 12-2
  • Synonyms
    TCRAV12S2, TCRAV2S1, TRAV122
  • Links
    NCBI Gene ID: 28673
    UniProt: A0A075B6T6

  • Chr Location
    14q11.2; chr14:21887959-21888502 (+)  GRCh38.p7

  • Human Ortholog
    TRAV12-3, T cell receptor alpha variable 12-3
  • Synonyms
    TCRAV12S3, TCRAV2S2, TRAV123
  • Links
    NCBI Gene ID: 28672
    UniProt: A0A0B4J271

  • Chr Location
    14q11.2; chr14:21965507-21966061 (+)  GRCh38.p7

Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
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  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 627273 NCBI Gene Model | MGI Sequence Detail 527 C57BL/6J ±  kb
polypeptide A0A075B604 UniProt | EBI | MGI Sequence Detail 112 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
References
more
  • Summaries
    All 8
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2022
MGI 6.20
The Jackson Laboratory