Gm12405 Gene Detail

Summary

• Symbol
  Gm12405
• Name
  predicted gene 12405

• Feature Type
  lncRNA gene
• IDs
  MGI:3649392
  NCBI Gene: 102637788
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:41642185-41643077 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 21.80 cM

Strain
Comparison

• SNPs within 2kb
  7 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649392	lncRNA gene	Chr4:41642185-41649726 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003888	antisense lncRNA gene	Chr4:39598211-39599103 (+)
A/J	MGP_AJ_G0003868	antisense lncRNA gene	Chr4:38089004-38089896 (+)
AKR/J	MGP_AKRJ_G0003845	antisense lncRNA gene	Chr4:39082255-39083147 (+)
BALB/cJ	MGP_BALBcJ_G0003855	antisense lncRNA gene	Chr4:38422971-38423863 (+)
C3H/HeJ	MGP_C3HHeJ_G0003800	antisense lncRNA gene	Chr4:39623627-39624519 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003999	antisense lncRNA gene	Chr4:41064388-41065280 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003496	antisense lncRNA gene	Chr4:35743201-35744095 (+)
CAST/EiJ	MGP_CASTEiJ_G0003766	antisense lncRNA gene	Chr4:39300948-39301840 (+)
CBA/J	MGP_CBAJ_G0003794	antisense lncRNA gene	Chr4:42461275-42462167 (+)
DBA/2J	MGP_DBA2J_G0003809	antisense lncRNA gene	Chr4:38026131-38027023 (+)
FVB/NJ	MGP_FVBNJ_G0003829	antisense lncRNA gene	Chr4:37340634-37341526 (+)
LP/J	MGP_LPJ_G0003890	antisense lncRNA gene	Chr4:39669149-39670041 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003817	antisense lncRNA gene	Chr4:45754518-45755410 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003998	antisense lncRNA gene	Chr4:39189912-39190804 (+)
PWK/PhJ	MGP_PWKPhJ_G0003722	antisense lncRNA gene	Chr4:38041106-38041997 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003667	antisense lncRNA gene	Chr4:38922371-38923253 (+)
WSB/EiJ	MGP_WSBEiJ_G0003802	antisense lncRNA gene	Chr4:39175943-39176835 (+)

Homology

• Gene Tree
  Gm12405
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Gm12405
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  4

• Ensembl
  ENSMUSG00000087054 (Evidence)
• NCBI Gene
  102637788

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087054	Ensembl Gene Model | MGI Sequence Detail	893	C57BL/6J
transcript	ENSMUST00000141120	Ensembl | MGI Sequence Detail	660	Not Applicable

References

• Summaries
  All 7

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;