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Gm12474 Gene Detail
Summary
  • Symbol
    Gm12474
  • Name
    predicted gene 12474
  • Feature Type
    lncRNA gene
  • IDs
    MGI:3649378
    NCBI Gene: 545557
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:100489664-100523920 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 3, 43.71 cM
Strain
Comparison
more
  • SNPs within 2kb
    255 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649378
lncRNA gene Chr3:100489664-100531208 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006256
lincRNA gene Chr3:101605946-101640068 (+)
A/J MGP_AJ_G0006249
lincRNA gene Chr3:98397407-98431530 (+)
AKR/J MGP_AKRJ_G0006225
lincRNA gene Chr3:100781485-100815694 (+)
BALB/cJ MGP_BALBcJ_G0006223
lincRNA gene Chr3:98162048-98196162 (+)
C3H/HeJ MGP_C3HHeJ_G0006175
lincRNA gene Chr3:101106806-101142477 (+)
C57BL/6NJ MGP_C57BL6NJ_G0006388
lincRNA gene Chr3:105337205-105371311 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0005687
lincRNA gene Chr3:94610214-94644848 (+)
CAST/EiJ MGP_CASTEiJ_G0006109
lincRNA gene Chr3:100212963-100249164 (+)
CBA/J MGP_CBAJ_G0006159
lincRNA gene Chr3:108938407-108977016 (+)
DBA/2J MGP_DBA2J_G0006180
lincRNA gene Chr3:97641226-97675329 (+)
FVB/NJ MGP_FVBNJ_G0006201
lincRNA gene Chr3:95579585-95613705 (+)
LP/J MGP_LPJ_G0006261
lincRNA gene Chr3:102959536-102994483 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006192
lincRNA gene Chr3:115196475-115231683 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0006394
lincRNA gene Chr3:100293174-100327230 (+)
PWK/PhJ MGP_PWKPhJ_G0006049
lincRNA gene Chr3:97394107-97432438 (+)
SPRET/EiJ MGP_SPRETEiJ_G0005960
lincRNA gene Chr3:98400896-98436284 (+)
WSB/EiJ MGP_WSBEiJ_G0006156
lincRNA gene Chr3:100858259-100892455 (+)



Homology
less
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm12474
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000053957 Ensembl Gene Model | MGI Sequence Detail 34257 C57BL/6J ±  kb
transcript ENSMUST00000122898 Ensembl | MGI Sequence Detail 1410 Not Applicable  
polypeptide Q8BPS1 UniProt | EBI | MGI Sequence Detail 155 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3
References
more
  • Summaries
    All 12
    Diseases 1
    Phenotypes 3
  • Earliest
    J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
03/24/2020
MGI 6.15
The Jackson Laboratory