Gm12059 Gene Detail

Summary

• Symbol
  Gm12059
• Name
  predicted gene 12059

• Feature Type
  lncRNA gene
• IDs
  MGI:3649372
  NCBI Gene: 100042875
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr11:23017998-23025574 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 14.26 cM

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649372	lncRNA gene	Chr11:23015064-23026310 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015159	unclassified non-coding RNA gene	Chr11:20789544-20797538 (+)
A/J	MGP_AJ_G0015133	unclassified non-coding RNA gene	Chr11:19993648-20000930 (+)
AKR/J	MGP_AKRJ_G0015096	unclassified non-coding RNA gene	Chr11:20708441-20715557 (+)
BALB/cJ	MGP_BALBcJ_G0015096	unclassified non-coding RNA gene	Chr11:20129321-20136705 (+)
C3H/HeJ	MGP_C3HHeJ_G0014919	unclassified non-coding RNA gene	Chr11:20587237-20597472 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015552	unclassified non-coding RNA gene	Chr11:21650332-21661723 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013298	unclassified non-coding RNA gene	Chr11:18893297-18900329 (+)
CAST/EiJ	MGP_CASTEiJ_G0014473	unclassified non-coding RNA gene	Chr11:20643733-20652731 (+)
CBA/J	MGP_CBAJ_G0014898	unclassified non-coding RNA gene	Chr11:22606519-22615978 (+)
DBA/2J	MGP_DBA2J_G0014991	unclassified non-coding RNA gene	Chr11:19923469-19931039 (+)
FVB/NJ	MGP_FVBNJ_G0015003	unclassified non-coding RNA gene	Chr11:19700815-19707948 (+)
LP/J	MGP_LPJ_G0015073	unclassified non-coding RNA gene	Chr11:20903806-20911920 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015029	unclassified non-coding RNA gene	Chr11:23074517-23087318 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015591	unclassified non-coding RNA gene	Chr11:20821582-20828759 (+)
PWK/PhJ	MGP_PWKPhJ_G0014265	unclassified non-coding RNA gene	Chr11:19959705-19968699 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0014576	unclassified non-coding RNA gene	Chr11:20447019-20454794 (+)

Homology

• Gene Tree
  Gm12059
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm12059
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000085665 (Evidence)
• NCBI Gene
  100042875

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085665	Ensembl Gene Model | MGI Sequence Detail	7577	C57BL/6J
transcript	ENSMUST00000128996	Ensembl | MGI Sequence Detail	3105	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6

TSS for Gm12059:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr100606	Chr11:23017992-23018005 (+)	1 bp