Gm13653 Pseudogene Detail

Summary

• Symbol
  Gm13653
• Name
  predicted gene 13653

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3649358
  NCBI Gene: 108168770
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr2:75022621-75023103 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 44.53 cM

Strain
Comparison

• SNPs within 2kb
  108 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649358	pseudogene	Chr2:75022564-75023103 (+)
129S1/SvImJ	ENSMUSG00200004280	pseudogene	Chr2:72073936-72074418 (+)
A/J	ENSMUSG00195019826	pseudogene	Chr2:72220683-72221165 (+)
AKR/J	ENSMUSG00220002363	pseudogene	Chr2:72185354-72185836 (+)
BALB/cJ	ENSMUSG00180006961	pseudogene	Chr2:72174360-72174842 (+)
C3H/HeJ	ENSMUSG00175011099	pseudogene	Chr2:72297689-72298171 (+)
C57BL/6NJ	ENSMUSG00215029883	pseudogene	Chr2:72134829-72135311 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005031071	pseudogene	Chr2:71619403-71619885 (+)
CBA/J	ENSMUSG00210002497	pseudogene	Chr2:72340316-72340798 (+)
DBA/2J	ENSMUSG00185011810	pseudogene	Chr2:72176176-72176658 (+)
FVB/NJ	ENSMUSG00205018810	pseudogene	Chr2:71630703-71631185 (+)
JF1/MsJ	ENSUMUG00000044347	pseudogene	Chr2:71858780-71859250 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190011014	pseudogene	Chr2:72250701-72251183 (+)
NZO/HlLtJ	ENSMUSG00225015686	pseudogene	Chr2:81735228-81735710 (+)
PWK/PhJ	ENSLUMG00010033347	pseudogene	Chr2:72097519-72097989 (+)
SPRET/EiJ	ENSMSPG00010023672	pseudogene	Chr2:73487800-73488282 (+)
WSB/EiJ	ENSIUOG00005011459	pseudogene	Chr2:72297431-72297913 (+)

Homology

• Gene Tree
  Gm13653
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Gm13653
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  2

• Ensembl
  ENSMUSG00000075276 (Evidence)
• NCBI Gene
  108168770

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000075276	Ensembl Gene Model | MGI Sequence Detail	483	C57BL/6J
transcript	ENSMUST00000122260	Ensembl | MGI Sequence Detail	483	Not Applicable
polypeptide	XP_036018682	RefSeq | MGI Sequence Detail	160	C57BL/6J

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 6
• Earliest
  J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
• Latest
  J:308920 Bolt CC, et al., Mesomelic dysplasias associated with the HOXD locus are caused by regulatory reallocations. Nat Commun. 2021 Aug 18;12(1):5013