Gm11873 Pseudogene Detail

Summary

• Symbol
  Gm11873
• Name
  predicted gene 11873

• Feature Type
  pseudogene
• IDs
  MGI:3649334
  NCBI Gene: 100416132
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:20391096-20392399 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 8.29 cM

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649334	pseudogene	Chr4:20391038-20392469 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012545	pseudogene	Chr4:17399120-17400423 (+)
A/J	MGP_AJ_G0012538	pseudogene	Chr4:16929108-16930411 (+)
AKR/J	MGP_AKRJ_G0012504	pseudogene	Chr4:17313108-17314411 (+)
BALB/cJ	MGP_BALBcJ_G0012524	pseudogene	Chr4:16930963-16932266 (+)
C3H/HeJ	MGP_C3HHeJ_G0012384	pseudogene	Chr4:17417472-17418775 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012837	pseudogene	Chr4:18170372-18171675 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011174	pseudogene	Chr4:15682721-15684013 (+)
CAST/EiJ	MGP_CASTEiJ_G0012144	pseudogene	Chr4:17235151-17236454 (+)
CBA/J	MGP_CBAJ_G0012363	pseudogene	Chr4:18664057-18665360 (+)
DBA/2J	MGP_DBA2J_G0012417	pseudogene	Chr4:16748071-16749374 (+)
FVB/NJ	MGP_FVBNJ_G0012421	pseudogene	Chr4:16469372-16470675 (+)
LP/J	MGP_LPJ_G0012491	pseudogene	Chr4:17465949-17467252 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012427	pseudogene	Chr4:19723936-19725239 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012839	pseudogene	Chr4:17198884-17200187 (+)
PWK/PhJ	MGP_PWKPhJ_G0011975	pseudogene	Chr4:16653533-16654836 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011794	pseudogene	Chr4:17088117-17089420 (+)
WSB/EiJ	MGP_WSBEiJ_G0012169	pseudogene	Chr4:17250042-17251345 (+)

Homology

• Gene Tree
  Gm11873
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000081964 (Evidence)
• NCBI Gene
  100416132

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081964	Ensembl Gene Model | MGI Sequence Detail	1304	C57BL/6J
transcript	ENSMUST00000117877	Ensembl | MGI Sequence Detail	1304	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;