Gm11872 Gene Detail

Summary

• Symbol
  Gm11872
• Name
  predicted gene 11872

• Feature Type
  lncRNA gene
• IDs
  MGI:3649333
  NCBI Gene: 102632436
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:20343706-20347818 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 8.12 cM

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649333	lncRNA gene	Chr4:20342918-20349449 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0003879	antisense lncRNA gene	Chr4:17352645-17356756 (+)
A/J	MGP_AJ_G0003859	antisense lncRNA gene	Chr4:16884626-16888738 (+)
AKR/J	MGP_AKRJ_G0003836	antisense lncRNA gene	Chr4:17261956-17266070 (+)
BALB/cJ	MGP_BALBcJ_G0003846	antisense lncRNA gene	Chr4:16880061-16884172 (+)
C3H/HeJ	MGP_C3HHeJ_G0003791	antisense lncRNA gene	Chr4:17370198-17374309 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0003990	antisense lncRNA gene	Chr4:18121114-18125233 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003488	antisense lncRNA gene	Chr4:15643437-15648532 (+)
CAST/EiJ	MGP_CASTEiJ_G0003757	antisense lncRNA gene	Chr4:17192409-17196520 (+)
CBA/J	MGP_CBAJ_G0003785	antisense lncRNA gene	Chr4:18615875-18619940 (+)
DBA/2J	MGP_DBA2J_G0003800	antisense lncRNA gene	Chr4:16700895-16705006 (+)
FVB/NJ	MGP_FVBNJ_G0003820	antisense lncRNA gene	Chr4:16420764-16426270 (+)
LP/J	MGP_LPJ_G0003881	antisense lncRNA gene	Chr4:17419454-17423565 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003808	antisense lncRNA gene	Chr4:19677087-19681246 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003989	antisense lncRNA gene	Chr4:17153134-17157246 (+)
PWK/PhJ	MGP_PWKPhJ_G0003713	antisense lncRNA gene	Chr4:16612258-16616357 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003658	antisense lncRNA gene	Chr4:17046880-17050984 (+)
WSB/EiJ	MGP_WSBEiJ_G0003793	antisense lncRNA gene	Chr4:17205165-17209275 (+)

Homology

• Gene Tree
  Gm11872
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  2

• Ensembl
  ENSMUSG00000086017 (Evidence)
• NCBI Gene
  102632436

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000086017	Ensembl Gene Model | MGI Sequence Detail	4113	C57BL/6J
transcript	ENSMUST00000141819	Ensembl | MGI Sequence Detail	2219	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;