Gm12957 Pseudogene Detail

Summary

• Symbol
  Gm12957
• Name
  predicted gene 12957

• Feature Type
  pseudogene
• IDs
  MGI:3649304
  NCBI Gene: 384052
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:119378187-119378563 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 55.42 cM

Strain
Comparison

• SNPs within 2kb
  18 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649304	pseudogene	Chr4:119378187-119378610 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012853	pseudogene	Chr4:120724069-120724445 (+)
A/J	MGP_AJ_G0012838	pseudogene	Chr4:115983306-115983682 (+)
AKR/J	MGP_AKRJ_G0012808	pseudogene	Chr4:118499048-118499424 (+)
BALB/cJ	MGP_BALBcJ_G0012817	pseudogene	Chr4:116614041-116614417 (+)
C3H/HeJ	MGP_C3HHeJ_G0012676	pseudogene	Chr4:120065134-120065510 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013156	pseudogene	Chr4:125304842-125305218 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0012424	pseudogene	Chr4:117389999-117390372 (+)
CBA/J	MGP_CBAJ_G0012652	pseudogene	Chr4:128705124-128705500 (+)
DBA/2J	MGP_DBA2J_G0012713	pseudogene	Chr4:116570679-116571055 (+)
FVB/NJ	MGP_FVBNJ_G0012716	pseudogene	Chr4:115088682-115089058 (+)
LP/J	MGP_LPJ_G0012789	pseudogene	Chr4:120846380-120846756 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012727	pseudogene	Chr4:133582126-133582502 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013168	pseudogene	Chr4:119575655-119576031 (+)
PWK/PhJ	MGP_PWKPhJ_G0012244	pseudogene	Chr4:113494758-113495255 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012055	pseudogene	Chr4:115989055-115989430 (+)
WSB/EiJ	MGP_WSBEiJ_G0012452	pseudogene	Chr4:119583163-119583539 (+)

Homology

• Gene Tree
  Gm12957
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Gm12957
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20

• Ensembl
  ENSMUSG00000084379 (Evidence)
• NCBI Gene
  384052

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084379	Ensembl Gene Model | MGI Sequence Detail	377	C57BL/6J
transcript	ENSMUST00000117835	Ensembl | MGI Sequence Detail	377	Not Applicable

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:109762 Mouse Genome Informatics and VEGA Genome Database Project, Collaboration to Associate VEGA (Vertebrate Genome Annotation) Mouse Gene Models with MGI Markers. Database Release. 2006;

TSS for Gm12957:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr38737	Chr4:119378153-119378154 (+)	-33 bp