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Gm12250 Pseudogene Detail
Summary
  • Symbol
    Gm12250
  • Name
    predicted gene 12250
  • Synonyms
    Irgb10
Location &
Maps
more
  • Sequence Map
    Chr11:58187739-58189012 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 11, 35.96 cM
Strain
Comparison
more
  • SNPs within 2kb
    62 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3649299
pseudogene Chr11:58183843-58190198 (+)
129S1/SvImJ MGP_129S1SvImJ_G0010725
pseudogene Chr11:57863496-57864769 (+)
A/J MGP_AJ_G0010721
pseudogene Chr11:55674906-55676179 (+)
AKR/J MGP_AKRJ_G0010679
pseudogene Chr11:57502110-57503383 (+)
BALB/cJ MGP_BALBcJ_G0010693
pseudogene Chr11:56014724-56015997 (+)
C3H/HeJ MGP_C3HHeJ_G0010605
pseudogene Chr11:57435788-57437061 (+)
C57BL/6NJ MGP_C57BL6NJ_G0010968
pseudogene Chr11:59642503-59643776 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0009599
pseudogene Chr11:53025131-53026404 (+)
CAST/EiJ MGP_CASTEiJ_G0010428
pseudogene Chr11:57530877-57532150 (+)
CBA/J MGP_CBAJ_G0010580
pseudogene Chr11:62391130-62392403 (+)
DBA/2J MGP_DBA2J_G0010618
pseudogene Chr11:55320537-55321810 (+)
FVB/NJ MGP_FVBNJ_G0010634
pseudogene Chr11:55016530-55017803 (+)
LP/J MGP_LPJ_G0010705
pseudogene Chr11:58399885-58401158 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0010608
pseudogene Chr11:63510545-63511818 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0010941
pseudogene Chr11:57544727-57546000 (+)
PWK/PhJ MGP_PWKPhJ_G0010323
pseudogene Chr11:55926296-55927569 (+)
SPRET/EiJ MGP_SPRETEiJ_G0010132
pseudogene Chr11:57424592-57425865 (+)
WSB/EiJ MGP_WSBEiJ_G0010485
pseudogene Chr11:57175894-57177167 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Interactions
less
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
  • UniGene
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000082292 Ensembl Gene Model | MGI Sequence Detail 1274 C57BL/6J ±  kb
transcript ENSMUST00000119467 Ensembl | MGI Sequence Detail 1274 Not Applicable  
polypeptide NP_001128587 RefSeq | MGI Sequence Detail 417 C57BL/6  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007743 Immunity-related GTPases-like
    IPR030385 IRG-type guanine nucleotide-binding (G) domain
    IPR027417 P-loop containing nucleoside triphosphate hydrolase
Molecular
Reagents
less

  • Microarray probesets 1
References
more
  • Summaries
    All 19
    Gene Ontology 1
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:287406 Place DE, et al., Interferon inducible GBPs restrict Burkholderia thailandensis motility induced cell-cell fusion. PLoS Pathog. 2020 Mar;16(3):e1008364

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2020
MGI 6.15
The Jackson Laboratory