Gm11714 Gene Detail

Summary

• Symbol
  Gm11714
• Name
  predicted gene 11714

• Feature Type
  lncRNA gene
• IDs
  MGI:3649214
  NCBI Gene: 108167930
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  Chr11:107319076-107326515 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 11, 70.29 cM

Strain
Comparison

• SNPs within 2kb
  305 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649214	lncRNA gene	Chr11:107319055-107326515 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015215	unclassified non-coding RNA gene	Chr11:110822906-110832020 (+)
A/J	MGP_AJ_G0015189	unclassified non-coding RNA gene	Chr11:106073902-106081567 (+)
AKR/J	MGP_AKRJ_G0015152	unclassified non-coding RNA gene	Chr11:109243389-109252405 (+)
BALB/cJ	MGP_BALBcJ_G0015151	unclassified non-coding RNA gene	Chr11:106492247-106499581 (+)
C3H/HeJ	MGP_C3HHeJ_G0014975	unclassified non-coding RNA gene	Chr11:109550976-109559281 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015608	unclassified non-coding RNA gene	Chr11:114243900-114251339 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013350	unclassified non-coding RNA gene	Chr11:103347092-103354485 (+)
CAST/EiJ	MGP_CASTEiJ_G0014528	unclassified non-coding RNA gene	Chr11:110634503-110643747 (+)
CBA/J	MGP_CBAJ_G0014954	unclassified non-coding RNA gene	Chr11:118963862-118973244 (+)
DBA/2J	MGP_DBA2J_G0015047	unclassified non-coding RNA gene	Chr11:105551022-105558581 (+)
FVB/NJ	MGP_FVBNJ_G0015058	unclassified non-coding RNA gene	Chr11:105046068-105053428 (+)
LP/J	MGP_LPJ_G0015128	unclassified non-coding RNA gene	Chr11:111271993-111280020 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015085	unclassified non-coding RNA gene	Chr11:118173643-118182971 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015647	unclassified non-coding RNA gene	Chr11:109767553-109784399 (+)
PWK/PhJ	MGP_PWKPhJ_G0014320	unclassified non-coding RNA gene	Chr11:106676261-106684235 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014107	unclassified non-coding RNA gene	Chr11:109551348-109558884 (+)
WSB/EiJ	MGP_WSBEiJ_G0014631	unclassified non-coding RNA gene	Chr11:109735438-109746460 (+)

Homology

• Gene Tree
  Gm11714
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  86
• Gene trapped
  86
• Find Mice (IMSR)
  26 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000087113 (Evidence)
• NCBI Gene
  108167930

Representative Sequences			Length	Strain/Species
genomic	108167930	NCBI Gene Model | MGI Sequence Detail	7440	C57BL/6J
transcript	NR_168694	RefSeq | MGI Sequence Detail	905	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm11714:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr105582	Chr11:107319057-107319067 (+)	-14 bp
Tssr105583	Chr11:107319068-107319083 (+)	0 bp
Tssr105584	Chr11:107319099-107319109 (+)	28 bp
Tssr105585	Chr11:107319132-107319143 (+)	62 bp
Tssr105586	Chr11:107319147-107319179 (+)	87 bp