Psenen-ps Pseudogene Detail

Summary

• Symbol
  Psenen-ps
• Name
  presenilin enhancer gamma secretase subunit, pseudogene
• Synonyms
  Gm12396

• Feature Type
  pseudogene
• IDs
  MGI:3649201
  NCBI Gene: 100042305
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr4:40775259-40775564 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 20.46 cM

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3649201	pseudogene	Chr4:40775129-40775773 (-)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0011197	pseudogene	Chr15:81817648-81818442 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0011165	pseudogene	Chr15:81955192-81955488 (-)
C3H/HeJ	MGP_C3HHeJ_G0011064	pseudogene	Chr15:84157812-84158108 (-)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0012138	pseudogene	Chr7:29794561-29795384 (-)
CAST/EiJ	MGP_CASTEiJ_G0010889	pseudogene	Chr15:84951781-84952074 (-)
CBA/J	MGP_CBAJ_G0011044	pseudogene	Chr15:91025484-91025768 (-)
DBA/2J	MGP_DBA2J_G0011092	pseudogene	Chr15:81299732-81300028 (-)
FVB/NJ	MGP_FVBNJ_G0011093	pseudogene	Chr15:80354265-80354561 (-)
LP/J	MGP_LPJ_G0011183	pseudogene	Chr15:85106435-85106741 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012501	pseudogene	Chr4:44808769-44809065 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012917	pseudogene	Chr4:38272482-38272774 (-)
PWK/PhJ	MGP_PWKPhJ_G0010761	pseudogene	Chr15:81292847-81293140 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0012921	pseudogene	Chr7:20017540-20018387 (-)
WSB/EiJ	MGP_WSBEiJ_G0010935	pseudogene	Chr15:84706081-84706365 (-)

Homology

• Gene Tree
  Psenen-ps
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Chemically and radiation induced
  1
• Genomic Mutations
  1 involving Psenen-ps
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000056412 (Evidence)
• NCBI Gene
  100042305

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056412	Ensembl Gene Model | MGI Sequence Detail	306	C57BL/6J
transcript	ENSMUST00000121600	Ensembl | MGI Sequence Detail	306	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;