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Trim43b Gene Detail
Summary
  • Symbol
    Trim43b
  • Name
    tripartite motif-containing 43B
  • Synonyms
    Gm8269
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648996
    NCBI Gene: 666747
  • Alliance
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:89084624-89092835 bp, - strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 47.24 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    14 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3648996
protein coding gene Chr9:89084624-89092835 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035114
protein coding gene Chr9:89964033-89977943 (-)
A/J MGP_AJ_G0035093
protein coding gene Chr9:86350384-86359359 (+)
AKR/J no annotation
BALB/cJ MGP_BALBcJ_G0035084
protein coding gene Chr9:86238165-86263230 (+)
C3H/HeJ MGP_C3HHeJ_G0034794
protein coding gene Chr9:89123725-89138458 (+)
C57BL/6NJ MGP_C57BL6NJ_G0035607
protein coding gene Chr9:92436179-92446503 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034874
protein coding gene Chr9:85193901-85204091 (+)
LP/J MGP_LPJ_G0035004
protein coding gene Chr9:89666992-89683228 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034910
protein coding gene Chr9:97050967-97059497 (+)
NZO/HlLtJ no annotation
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 666747 NCBI Gene Model | MGI Sequence Detail 8212 C57BL/6J ±  kb
transcript NM_001170884 RefSeq | MGI Sequence Detail 2262 C57BL/6  
polypeptide P86448 UniProt | EBI | MGI Sequence Detail 445 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR001870 B30.2/SPRY domain
    IPR000315 B-box-type zinc finger
    IPR003879 Butyrophylin-like, SPRY domain
    IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    IPR018957 Zinc finger, C3HC4 RING-type
    IPR013083 Zinc finger, RING/FYVE/PHD-type
    IPR001841 Zinc finger, RING-type
    IPR017907 Zinc finger, RING-type, conserved site
Molecular
Reagents
less
  • All nucleic 21
    cDNA 19
    Primer pair 2
Other
Accession IDs
less
MGI:2143401
References
more
  • Summaries
    All 18
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
09/10/2019
MGI 6.14
The Jackson Laboratory