Gm5468 Gene Detail

Summary

• Symbol
  Gm5468
• Name
  predicted gene 5468
• Synonyms
  100040583, Gm48957

• Feature Type
  lncRNA gene
• IDs
  MGI:3648948
  NCBI Gene: 432939
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr15:25414276-25481434 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2283 from dbSNP Build 142
• Strain Annotations
  40

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648948	lncRNA gene	Chr15:25413946-25481541 (+)
129S1/SvImJ	ENSMUSG00200028412	lncRNA gene	Chr15:22425763-22426480 (+)
129S1/SvImJ	ENSMUSG00200028264	lncRNA gene	Chr15:22426629-22476499 (+)
A/J	ENSMUSG00195014401	lncRNA gene	Chr15:22372501-22421214 (+)
A/J	ENSMUSG00195014318	lncRNA gene	Chr15:22371633-22372350 (+)
AKR/J	ENSMUSG00220047440	lncRNA gene	Chr15:22221957-22222674 (+)
AKR/J	ENSMUSG00220047503	lncRNA gene	Chr15:22222823-22272224 (+)
AKR/J	ENSMUSG00220047045	protein coding gene	Chr15:22222055-22254767 (+)
BALB/cJ	ENSMUSG00180005501	lncRNA gene	Chr15:22306660-22356072 (+)
BALB/cJ	ENSMUSG00180005300	protein coding gene	Chr15:22305892-22338615 (+)
BALB/cJ	ENSMUSG00180005689	lncRNA gene	Chr15:22305794-22306511 (+)
C3H/HeJ	ENSMUSG00175004754	lncRNA gene	Chr15:22441020-22490980 (+)
C3H/HeJ	ENSMUSG00175004826	lncRNA gene	Chr15:22440154-22440871 (+)
C57BL/6NJ	ENSMUSG00215005687	lncRNA gene	Chr15:22362603-22412013 (+)
C57BL/6NJ	ENSMUSG00215005054	protein coding gene	Chr15:22361835-22394552 (+)
C57BL/6NJ	ENSMUSG00215005602	lncRNA gene	Chr15:22361737-22362454 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0019695	protein coding gene	Chr15:20832192-20832844 (+)
CAST/EiJ	ENSTCUG00005015314	lncRNA gene	Chr15:22420278-22469938 (+)
CAST/EiJ	ENSTCUG00005015264	lncRNA gene	Chr15:22419409-22420126 (+)
CBA/J	ENSMUSG00210024686	lncRNA gene	Chr15:22416337-22417054 (+)
CBA/J	ENSMUSG00210024503	lncRNA gene	Chr15:22417203-22467080 (+)
DBA/2J	ENSMUSG00185024495	lncRNA gene	Chr15:22408882-22409599 (+)
DBA/2J	ENSMUSG00185023610	lncRNA gene	Chr15:22409749-22459645 (+)
FVB/NJ	ENSMUSG00205014134	lncRNA gene	Chr15:22331882-22332599 (+)
FVB/NJ	ENSMUSG00205014237	lncRNA gene	Chr15:22332751-22381467 (+)
JF1/MsJ	ENSUMUG00000014659	lncRNA gene	Chr15:22406161-22456968 (+)
JF1/MsJ	ENSUMUG00000013313	lncRNA gene	Chr15:22405295-22406012 (+)
LP/J	ENSMUSG00230015790	lncRNA gene	Chr15:25895548-25896265 (+)
LP/J	ENSMUSG00230015575	lncRNA gene	Chr15:25896414-25946276 (+)
NOD/ShiLtJ	ENSMUSG00190012664	lncRNA gene	Chr15:22380328-22429751 (+)
NOD/ShiLtJ	ENSMUSG00190011673	protein coding gene	Chr15:22379560-22412293 (+)
NOD/ShiLtJ	ENSMUSG00190012602	lncRNA gene	Chr15:22379462-22380179 (+)
NZO/HlLtJ	ENSMUSG00225031982	lncRNA gene	Chr15:26122593-26172552 (+)
NZO/HlLtJ	ENSMUSG00225032065	lncRNA gene	Chr15:26121727-26122444 (+)
PWK/PhJ	ENSLUMG00010022279	lncRNA gene	Chr15:22516992-22517709 (+)
PWK/PhJ	ENSLUMG00010022206	lncRNA gene	Chr15:22517857-22568439 (+)
SPRET/EiJ	ENSMSPG00010024404	lncRNA gene	Chr15:22934475-22983816 (+)
SPRET/EiJ	ENSMSPG00010025056	lncRNA gene	Chr15:22933613-22934328 (+)
WSB/EiJ	ENSIUOG00005021090	lncRNA gene	Chr15:22422034-22422751 (+)
WSB/EiJ	ENSIUOG00005021369	lncRNA gene	Chr15:22422900-22472853 (+)

Expression

• cDNA Data
  4

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  73
• RefSeq
  9
• UniProt
  1

• Ensembl
  ENSMUSG00000056089 (Evidence), ENSMUSG00000115729 (Evidence)
• NCBI Gene
  432939

Representative Sequences			Length	Strain/Species
genomic	432939	NCBI Gene Model | MGI Sequence Detail	67159	C57BL/6J
transcript	NR_027376	RefSeq | MGI Sequence Detail	2882	C57BL/6
polypeptide	Q8C3D3	UniProt | EBI | MGI Sequence Detail	155	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

Other
Accession IDs

MGI:3781024, MGI:6118287

References

• Summaries
  All 9
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm5468:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130802	Chr15:25414261-25414283 (+)	-4 bp
Tssr130803	Chr15:25414391-25414402 (+)	121 bp
Tssr4562	Chr15:25426112-25426113 (+)	11,837 bp