Hmgb1-ps7 Pseudogene Detail

Summary

• Symbol
  Hmgb1-ps7
• Name
  high-mobility group high mobility group box 1, pseudogene 7
• Synonyms
  EG434174, Hmg1l1

• Feature Type
  pseudogene
• IDs
  MGI:3648695
  NCBI Gene: 434174
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr7:41670260-41670907 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  44

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648695	pseudogene	Chr7:41670149-41671427 (+)
129S1/SvImJ	ENSMUSG00200026229	pseudogene	Chr7:29431797-29432444 (+)
A/J	ENSMUSG00195020849	pseudogene	Chr2:19651952-19652599 (-)
A/J	ENSMUSG00195039847	pseudogene	Chr17:19310026-19310667 (-)
A/J	ENSMUSG00195050351	pseudogene	Chr7:33295954-33296601 (+)
AKR/J	ENSMUSG00220033604	pseudogene	Chr7:20053847-20054494 (+)
AKR/J	ENSMUSG00220014357	pseudogene	Chr2:19773117-19773764 (-)
AKR/J	ENSMUSG00220016945	pseudogene	Chr13:71334692-71335330 (-)
BALB/cJ	ENSMUSG00180045305	pseudogene	Chr7:30673102-30673749 (+)
C3H/HeJ	ENSMUSG00175040894	pseudogene	Chr7:30914630-30915277 (+)
C57BL/6NJ	ENSMUSG00215029994	pseudogene	Chr7:29948436-29949083 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005041219	pseudogene	Chr8:68421233-68421881 (-)
CAST/EiJ	ENSTCUG00005020366	pseudogene	ChrX:44816676-44817323 (-)
CAST/EiJ	ENSTCUG00005024104	pseudogene	Chr17:18920581-18921222 (-)
CAST/EiJ	ENSTCUG00005048075	pseudogene	Chr11:53313516-53314163 (+)
CAST/EiJ	ENSTCUG00005049082	pseudogene	Chr7:33647741-33648388 (+)
CBA/J	ENSMUSG00210005948	pseudogene	Chr13:72837880-72838518 (-)
CBA/J	ENSMUSG00210050429	pseudogene	Chr7:30987356-30988003 (+)
DBA/2J	ENSMUSG00185040910	pseudogene	Chr2:19566348-19566995 (-)
DBA/2J	ENSMUSG00185026143	pseudogene	Chr3:146535256-146535903 (-)
DBA/2J	ENSMUSG00185049533	pseudogene	Chr7:34859060-34859707 (+)
DBA/2J	ENSMUSG00185019362	pseudogene	Chr13:76523571-76524209 (-)
FVB/NJ	ENSMUSG00205047957	pseudogene	Chr7:30846253-30846900 (+)
FVB/NJ	ENSMUSG00205015848	pseudogene	Chr2:19586872-19587519 (-)
JF1/MsJ	ENSUMUG00000055340	pseudogene	Chr5:134984806-134985450 (+)
JF1/MsJ	ENSUMUG00000033381	pseudogene	Chr7:39345478-39346125 (+)
JF1/MsJ	ENSUMUG00000014885	pseudogene	Chr14:110159479-110160126 (-)
JF1/MsJ	ENSUMUG00000030073	pseudogene	ChrX:78982383-78983030 (+)
JF1/MsJ	ENSUMUG00000043381	pseudogene	Chr6:25262790-25263437 (-)
JF1/MsJ	ENSUMUG00000035706	pseudogene	Chr13:76296118-76296765 (-)
JF1/MsJ	ENSUMUG00000035014	pseudogene	Chr9:87195580-87196227 (+)
LP/J	ENSMUSG00230051660	pseudogene	Chr7:40190534-40191181 (+)
NOD/ShiLtJ	ENSMUSG00190051766	pseudogene	Chr7:31215638-31216285 (+)
NZO/HlLtJ	ENSMUSG00225053683	pseudogene	Chr11:106056956-106057603 (+)
NZO/HlLtJ	ENSMUSG00225054863	pseudogene	Chr17:23727407-23728048 (-)
NZO/HlLtJ	ENSMUSG00225010562	pseudogene	Chr7:38564855-38565502 (+)
PWK/PhJ	ENSLUMG00010014922	pseudogene	Chr13:72401840-72402487 (-)
PWK/PhJ	ENSLUMG00010048439	pseudogene	ChrX:57840845-57841492 (+)
PWK/PhJ	ENSLUMG00010010415	pseudogene	Chr4:66452197-66452844 (+)
PWK/PhJ	ENSLUMG00010023363	pseudogene	Chr7:29752070-29752717 (+)
PWK/PhJ	ENSLUMG00010027692	pseudogene	Chr8:20341002-20341649 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005015968	pseudogene	Chr3:145992135-145992782 (-)
WSB/EiJ	ENSIUOG00005018021	pseudogene	Chr13:72085010-72085648 (-)
WSB/EiJ	ENSIUOG00005029582	pseudogene	Chr7:30614659-30615306 (+)

Homology

• Gene Tree
  Hmgb1-ps7
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas
• Other Vertebrate Links
  GEISHA HMGB1

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  1
• CCDS
  CCDS52213.1

• Ensembl
  ENSMUSG00000092281 (Evidence)
• NCBI Gene
  434174

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000092281	Ensembl Gene Model | MGI Sequence Detail	648	C57BL/6J
transcript	ENSMUST00000173370	Ensembl | MGI Sequence Detail	648	Not Applicable

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:155721 Mouse Genome Informatics (MGI) and The National Center for Biotechnology Information (NCBI), Consensus CDS project. Database Download. 2010;