Ccnb1-ps Pseudogene Detail

Summary

• Symbol
  Ccnb1-ps
• Name
  cyclin B1, pseudogene
• Synonyms
  Gm5593

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648694
  NCBI Gene: 434175
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr7:41755323-41756609 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 28.25 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648694	pseudogene	Chr7:41755193-41756726 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Human Ortholog
  CCNB1, cyclin B1

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  CCNB1, cyclin B1
  
• Synonyms
  CCNB
• Links
  HGNC:1579

  NCBI Gene ID: 891

  UniProt: P14635

  
  
• Chr Location
  5q13.2; chr5:69167135-69178245 (+)  GRCh38

---

• MGI Vertebrate Homology
  Ccnb1-ps stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: CCNB1
• Gene Tree
  Ccnb1-ps
  

Human Diseases

• Diseases
  2 with human CCNB1 associations

				Human Disease	Mouse Models
				breast cancer IDs breast cancer       DOID:1612 DOID:1648 DOID:4241 ICD10CM:C50 ICD9CM:174.8 MESH:D001943 NCI:C9335 OMIM:114480 UMLS_CUI:C0006142
				prostate cancer IDs prostate cancer       DOID:10283 DOID:514 ICD10CM:C61 ICD9CM:185 KEGG:05215 MESH:D011471 NCI:C3343 NCI:C7378 OMIM:176807 OMIM:300147 OMIM:300704 OMIM:601518 OMIM:602759 OMIM:608656 OMIM:608658 OMIM:609299 OMIM:609558 OMIM:610321 OMIM:610997 OMIM:611100 OMIM:611868 OMIM:611928 OMIM:611955 OMIM:611958 OMIM:611959 ORDO:1331 UMLS_CUI:C0033578 UMLS_CUI:C0376358

Click on a disease name to see all genes associated with that disease.

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  6
• RefSeq
  2

• Ensembl
  ENSMUSG00000048574 (Evidence)
• NCBI Gene
  434175

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000048574	Ensembl Gene Model | MGI Sequence Detail	1287	C57BL/6J
transcript	ENSMUST00000155338	Ensembl | MGI Sequence Detail	1287	Not Applicable
polypeptide	XP_036009568	RefSeq | MGI Sequence Detail	460	C57BL/6J

Other
Accession IDs

MGI:5887115

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;