Gm6104 Pseudogene Detail

Summary

• Symbol
  Gm6104
• Name
  predicted gene 6104

• Feature Type
  pseudogene
• IDs
  MGI:3648587
  NCBI Gene: 619829
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:4950272-4950874 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 1.79 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  11 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648587	pseudogene	Chr1:4949425-4950970 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010400	pseudogene	Chr1:160086937-160087518 (+)
A/J	MGP_AJ_G0010390	pseudogene	Chr1:153660405-153660986 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010298	pseudogene	Chr1:158512463-158513044 (+)
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009319	pseudogene	Chr1:145889438-145890013 (+)
CAST/EiJ	MGP_CASTEiJ_G0010117	pseudogene	Chr1:158034536-158035117 (+)
CBA/J	MGP_CBAJ_G0010267	pseudogene	Chr1:171446943-171447524 (+)
DBA/2J	MGP_DBA2J_G0010299	pseudogene	Chr1:152639142-152639723 (+)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0014243	pseudogene	ChrX:3750458-3751045 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010281	pseudogene	Chr1:179024315-179024896 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010602	pseudogene	Chr1:158192829-158193410 (+)
PWK/PhJ	MGP_PWKPhJ_G0010020	pseudogene	Chr1:151708056-151708637 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009833	pseudogene	Chr1:156935157-156936709 (+)
WSB/EiJ	MGP_WSBEiJ_G0010187	pseudogene	Chr1:158260340-158260921 (+)

Homology

• Gene Tree
  Gm6104
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000062588 (Evidence)
• NCBI Gene
  619829

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000062588	Ensembl Gene Model | MGI Sequence Detail	603	C57BL/6J
transcript	ENSMUST00000078030	Ensembl | MGI Sequence Detail	603	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6104:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr10891	Chr1:4950916-4950922 (-)	-45 bp