Gm5160 Pseudogene Detail

Summary

• Symbol
  Gm5160
• Name
  predicted gene 5160

• Feature Type
  pseudogene
• IDs
  MGI:3648528
  NCBI Gene: 382096
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr18:14557925-14558360 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 7.97 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  143 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648528	pseudogene	Chr18:14557881-14558576 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0024167	protein coding gene	Chr18:11706026-11706469 (+)
A/J	MGP_AJ_G0024129	protein coding gene	Chr18:11437961-11438404 (+)
AKR/J	MGP_AKRJ_G0024096	protein coding gene	Chr18:11797440-11797883 (+)
BALB/cJ	MGP_BALBcJ_G0024128	protein coding gene	Chr18:11401254-11401697 (+)
C3H/HeJ	MGP_C3HHeJ_G0023895	protein coding gene	Chr18:11676953-11677289 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0024573	protein coding gene	Chr18:12273875-12274318 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0022013	protein coding gene	Chr18:10974588-10975083 (+)
CAST/EiJ	MGP_CASTEiJ_G0023372	protein coding gene	Chr18:11580781-11581224 (+)
CBA/J	MGP_CBAJ_G0023867	protein coding gene	Chr18:12450274-12450717 (+)
DBA/2J	MGP_DBA2J_G0023996	protein coding gene	Chr18:11286587-11287030 (+)
FVB/NJ	MGP_FVBNJ_G0023961	protein coding gene	Chr18:11130531-11130974 (+)
LP/J	MGP_LPJ_G0024079	protein coding gene	Chr18:11813405-11813848 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0023990	protein coding gene	Chr18:12553308-12553751 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0024619	protein coding gene	Chr18:11557651-11558094 (+)
PWK/PhJ	MGP_PWKPhJ_G0023118	protein coding gene	Chr18:11375970-11376443 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0022927	protein coding gene	Chr18:11853405-11853885 (+)
WSB/EiJ	MGP_WSBEiJ_G0023438	protein coding gene	Chr18:11556254-11556697 (+)

Homology

• Gene Tree
  Gm5160
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000055795 (Evidence)
• NCBI Gene
  382096

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055795	Ensembl Gene Model | MGI Sequence Detail	436	C57BL/6J
transcript	ENSMUST00000069552	Ensembl | MGI Sequence Detail	436	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5160:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr150130	Chr18:14557878-14557880 (+)	-46 bp