Gm4832 Pseudogene Detail

Summary

• Symbol
  Gm4832
• Name
  predicted gene 4832

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648524
  NCBI Gene: 225058
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr17:88438143-88438541 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 57.87 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648524	pseudogene	Chr17:88432940-88438611 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039682	pseudogene	Chr17:91590397-91595995 (+)
A/J	MGP_AJ_G0039682	pseudogene	Chr17:88636734-88642335 (+)
AKR/J	MGP_AKRJ_G0039607	pseudogene	Chr17:90107746-90113362 (+)
BALB/cJ	MGP_BALBcJ_G0039652	pseudogene	Chr17:88465765-88471354 (+)
C3H/HeJ	MGP_C3HHeJ_G0039313	pseudogene	Chr17:91014197-91019796 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040212	pseudogene	Chr17:94767544-94773145 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036846	pseudogene	Chr17:83706322-83712030 (+)
CAST/EiJ	MGP_CASTEiJ_G0038434	pseudogene	Chr17:91850934-91856545 (+)
CBA/J	MGP_CBAJ_G0039284	pseudogene	Chr17:98780830-98786431 (+)
DBA/2J	MGP_DBA2J_G0039479	pseudogene	Chr17:87029025-87034622 (+)
FVB/NJ	MGP_FVBNJ_G0039435	pseudogene	Chr17:86546592-86552193 (+)
LP/J	MGP_LPJ_G0039518	pseudogene	Chr17:92384667-92390268 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039439	pseudogene	Chr17:98579931-98585532 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040313	pseudogene	Chr17:90671130-90676863 (+)
PWK/PhJ	MGP_PWKPhJ_G0038110	pseudogene	Chr17:86709059-86714830 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037859	pseudogene	Chr17:87409869-87415613 (+)
WSB/EiJ	MGP_WSBEiJ_G0038667	pseudogene	Chr17:91505109-91510698 (+)

Homology

• Gene Tree
  Gm4832
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000058869 (Evidence)
• NCBI Gene
  225058

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000058869	Ensembl Gene Model | MGI Sequence Detail	399	C57BL/6J
transcript	ENSMUST00000182679	Ensembl | MGI Sequence Detail	399	Not Applicable
polypeptide	NP_001177285	RefSeq | MGI Sequence Detail	133	C57BL/6

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR012678 Ribosomal protein uL23/eL15/eS24 core domain superfamily
  IPR001976 Small ribosomal subunit protein eS24

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 9

  Phenotypes 2
• Earliest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42

TSS for Gm4832:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr146226	Chr17:88438104-88438107 (+)	-37 bp