Gm5963 Pseudogene Detail

Summary

• Symbol
  Gm5963
• Name
  predicted pseudogene 5963

• Feature Type
  pseudogene
• IDs
  MGI:3648418
  NCBI Gene: 102638850
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr16:35393691-35393926 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 25.38 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  27 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648418	pseudogene	Chr16:35393640-35393969 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0010535	pseudogene	Chr10:80449820-80450069 (+)
A/J	MGP_AJ_G0010528	pseudogene	Chr10:77643829-77644078 (+)
AKR/J	MGP_AKRJ_G0011218	pseudogene	Chr16:33373723-33373970 (-)
BALB/cJ	MGP_BALBcJ_G0010502	pseudogene	Chr10:77870244-77870493 (+)
C3H/HeJ	MGP_C3HHeJ_G0011123	pseudogene	Chr16:33523506-33523741 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0011518	pseudogene	Chr16:34620230-34620465 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009438	pseudogene	Chr10:73870718-73870965 (+)
CAST/EiJ	MGP_CASTEiJ_G0010950	pseudogene	Chr16:33732531-33732778 (-)
CBA/J	MGP_CBAJ_G0011103	pseudogene	Chr16:36041758-36041993 (-)
DBA/2J	MGP_DBA2J_G0011150	pseudogene	Chr16:32078300-32078535 (-)
FVB/NJ	MGP_FVBNJ_G0012910	pseudogene	Chr5:29585704-29585928 (-)
LP/J	MGP_LPJ_G0010517	pseudogene	Chr10:80926350-80926599 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010417	pseudogene	Chr10:88424390-88424639 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010744	pseudogene	Chr10:79744785-79745034 (+)
PWK/PhJ	MGP_PWKPhJ_G0010149	pseudogene	Chr10:76723917-76724166 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009962	pseudogene	Chr10:78718753-78719002 (+)
WSB/EiJ	MGP_WSBEiJ_G0010314	pseudogene	Chr10:79767049-79767298 (+)

Homology

• Gene Tree
  Gm5963
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000052192 (Evidence)
• NCBI Gene
  102638850

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000052192	Ensembl Gene Model | MGI Sequence Detail	236	C57BL/6J
transcript	ENSMUST00000143451	Ensembl | MGI Sequence Detail	236	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm5963:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr140899	Chr16:35393963-35393974 (-)	-43 bp