Gm16401 Gene Detail

Summary

• Symbol
  Gm16401
• Name
  predicted gene 16401

• Feature Type
  lncRNA gene
• IDs
  MGI:3648398
  NCBI Gene: 100041413
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:44257784-44259857 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 24.14 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  51 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648398	lncRNA gene	Chr5:44257784-44259857 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004072	antisense lncRNA gene	Chr5:42746513-42748586 (+)
A/J	MGP_AJ_G0004053	antisense lncRNA gene	Chr5:41274583-41276656 (+)
AKR/J	MGP_AKRJ_G0004031	antisense lncRNA gene	Chr5:42730409-42732482 (+)
BALB/cJ	MGP_BALBcJ_G0004039	antisense lncRNA gene	Chr5:41743693-41745767 (+)
C3H/HeJ	MGP_C3HHeJ_G0003985	antisense lncRNA gene	Chr5:42714203-42716276 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004188	antisense lncRNA gene	Chr5:44805461-44807534 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003666	antisense lncRNA gene	Chr5:38494133-38496211 (+)
CAST/EiJ	MGP_CASTEiJ_G0003949	antisense lncRNA gene	Chr5:41830695-41832769 (+)
CBA/J	MGP_CBAJ_G0003979	antisense lncRNA gene	Chr5:45987505-45989578 (+)
DBA/2J	MGP_DBA2J_G0003994	antisense lncRNA gene	Chr5:41361486-41363559 (+)
FVB/NJ	MGP_FVBNJ_G0004013	antisense lncRNA gene	Chr5:40787822-40789895 (+)
LP/J	MGP_LPJ_G0004074	antisense lncRNA gene	Chr5:43211812-43213885 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004002	antisense lncRNA gene	Chr5:46795651-46797724 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004183	antisense lncRNA gene	Chr5:42223547-42225621 (+)
PWK/PhJ	MGP_PWKPhJ_G0003902	antisense lncRNA gene	Chr5:40494173-40496246 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0003847	antisense lncRNA gene	Chr5:41654043-41656116 (+)
WSB/EiJ	MGP_WSBEiJ_G0003984	antisense lncRNA gene	Chr5:42313795-42315868 (+)

Homology

• Gene Tree
  Gm16401
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  18 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (ENU)
  1
• Chemically induced (other)
  2
• Radiation induced
  2
• Spontaneous
  1
• Genomic Mutations
  6 involving Gm16401
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000072962 (Evidence)
• NCBI Gene
  100041413

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000072962	Ensembl Gene Model | MGI Sequence Detail	2074	C57BL/6J
transcript	ENSMUST00000197463	Ensembl | MGI Sequence Detail	2074	Not Applicable
polypeptide	Q3URN1	UniProt | EBI | MGI Sequence Detail	153	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 26

  Diseases 1

  Phenotypes 18
• Earliest
  J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
• Latest
  J:125425 Howell GR, et al., Mutation of a ubiquitously expressed mouse transmembrane protein (Tapt1) causes specific skeletal homeotic transformations. Genetics. 2007 Feb;175(2):699-707