Gm6451 Pseudogene Detail

Summary

• Symbol
  Gm6451
• Name
  predicted gene 6451

• Feature Type
  pseudogene
• IDs
  MGI:3648305
  NCBI Gene: 623804
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:150196664-150197380 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  9 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648305	pseudogene	ChrX:150196610-150197390 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0011168	pseudogene	Chr15:10713384-10714070 (+)
A/J	MGP_AJ_G0011160	pseudogene	Chr15:10412317-10412963 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	MGP_C3HHeJ_G0010362	pseudogene	Chr1:191066932-191067528 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015270	pseudogene	ChrX:137539039-137539679 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010008	pseudogene	Chr15:9897938-9899479 (+)
CAST/EiJ	MGP_CASTEiJ_G0010261	pseudogene	Chr10:113787853-113788582 (-)
CBA/J	MGP_CBAJ_G0010328	pseudogene	Chr1:206183199-206183795 (-)
DBA/2J	MGP_DBA2J_G0011054	pseudogene	Chr15:10250635-10251691 (+)
FVB/NJ	MGP_FVBNJ_G0011055	pseudogene	Chr15:10106593-10107386 (+)
LP/J	MGP_LPJ_G0011143	pseudogene	Chr15:10663342-10663992 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011049	pseudogene	Chr15:11645515-11647109 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010758	pseudogene	Chr10:113434816-113436094 (-)
PWK/PhJ	MGP_PWKPhJ_G0010723	pseudogene	Chr15:10446396-10447046 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010544	pseudogene	Chr15:10629399-10630076 (+)
WSB/EiJ	MGP_WSBEiJ_G0010896	pseudogene	Chr15:10665103-10666714 (+)

Homology

• Gene Tree
  Gm6451
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  1

• Ensembl
  ENSMUSG00000084166 (Evidence)
• NCBI Gene
  623804

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084166	Ensembl Gene Model | MGI Sequence Detail	717	C57BL/6J
transcript	ENSMUST00000121488	Ensembl | MGI Sequence Detail	717	Not Applicable

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm6451:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164392	ChrX:150197556-150197559 (-)	-178 bp