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Tnrc18 Gene Detail
Summary
  • Symbol
    Tnrc18
  • Name
    trinucleotide repeat containing 18
  • Synonyms
    EG381742, MGC:59613, Zfp469
  • Feature Type
    protein coding gene
  • IDs
    MGI:3648294
    NCBI Gene: 231861
Location & Maps
more
  • Sequence Map
    Chr5:142724661-142817662 bp, - strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      93002 bp   ±  kb flank

  • Genome Browsers
Homology
more
  • Human Ortholog
    TNRC18, trinucleotide repeat containing 18
  • Vertebrate Orthologs
    9
  • Human Ortholog
    TNRC18, trinucleotide repeat containing 18
    Orthology source: HomoloGene
  • Synonyms
    CAGL79, TNRC18A
  • Links
    NCBI Gene ID: 84629
    neXtProt AC: NX_O15417

  • Chr Location
    7p22.1; chr7:5306790-5423546 (-)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000017461 VEGA Gene Model | MGI Sequence Detail 93002 C57BL/6J ±  kb
transcript OTTMUST00000083126 VEGA | MGI Sequence Detail 9342 Not Applicable  
polypeptide OTTMUSP00000044613 VEGA | MGI Sequence Detail 2673 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    287 from dbSNP Build 142
Protein
Information
less
  • UniProt
    5 Sequences
  • Protein Ontology
    PR:000032010 trinucleotide repeat-containing gene 18 protein
  • InterPro Domains
    IPR001025 Bromo adjacent homology (BAH) domain
Molecular
Reagents
less
  • All nucleic 9
    Genomic 1
    cDNA 8

    Microarray probesets 2
Other
Accession IDs
less
MGI:2448535
References
more
  • Summaries
    All 24
    Gene Ontology 2
    Phenotypes 4
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
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last database update
05/17/2016
MGI 6.03
The Jackson Laboratory