Gm9119 Pseudogene Detail

Summary

• Symbol
  Gm9119
• Name
  predicted pseudogene 9119

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3648179
  NCBI Gene: 102632256
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:101821344-101823090 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 45.71 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  14 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648179	pseudogene	ChrX:101803860-101823102 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	MGP_AKRJ_G0040624	pseudogene	ChrX:102158290-102309299 (+)
BALB/cJ	MGP_BALBcJ_G0040692	pseudogene	ChrX:98022600-98103845 (+)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0041394	pseudogene	ChrX:102225060-102291668 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037516	pseudogene	ChrX:96969374-97077979 (+)
CAST/EiJ	MGP_CASTEiJ_G0039371	pseudogene	ChrX:83997352-83999241 (+)
CBA/J	MGP_CBAJ_G0040295	pseudogene	ChrX:105429708-105569857 (+)
DBA/2J	MGP_DBA2J_G0040510	pseudogene	ChrX:98479508-98548888 (+)
FVB/NJ	MGP_FVBNJ_G0040430	pseudogene	ChrX:97834379-97901374 (+)
LP/J	no annotation
NOD/ShiLtJ	MGP_NODShiLtJ_G0040434	pseudogene	ChrX:110101116-110125783 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0041442	pseudogene	ChrX:99041143-99088223 (+)
PWK/PhJ	MGP_PWKPhJ_G0039017	pseudogene	ChrX:81579713-81708598 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0038736	pseudogene	ChrX:84948729-84953256 (+)
WSB/EiJ	MGP_WSBEiJ_G0039614	pseudogene	ChrX:97657231-97734151 (+)

Homology

• Gene Tree
  Gm9119
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  2

• Ensembl
  ENSMUSG00000083680 (Evidence)
• NCBI Gene
  102632256

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083680	Ensembl Gene Model | MGI Sequence Detail	1747	C57BL/6J
transcript	ENSMUST00000118866	Ensembl | MGI Sequence Detail	495	Not Applicable
polypeptide	XP_030107395	RefSeq | MGI Sequence Detail	156	C57BL/6J

References

• Summaries
  All 4
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;