Gm7897 Pseudogene Detail

Summary

• Symbol
  Gm7897
• Name
  predicted gene 7897

• Feature Type
  pseudogene
• IDs
  MGI:3648011
  NCBI Gene: 666028
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:173657365-173659820 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 80.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  138 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3648011	pseudogene	Chr1:173657365-173659820 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039931	pseudogene	Chr1:179801130-179803571 (-)
A/J	MGP_AJ_G0039938	pseudogene	Chr1:172542326-172545491 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0039914	pseudogene	Chr1:173055622-173058063 (-)
C3H/HeJ	no annotation
C57BL/6NJ	MGP_C57BL6NJ_G0040489	pseudogene	Chr1:185874336-185876903 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0039691	pseudogene	Chr1:169590571-169595573 (-)
LP/J	MGP_LPJ_G0039767	pseudogene	Chr1:180889667-180892108 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039680	pseudogene	Chr1:199735729-199738170 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040582	pseudogene	Chr1:177576615-177579057 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Gm7897
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm7897
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  11

• Ensembl
  ENSMUSG00000102187 (Evidence)
• NCBI Gene
  666028

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102187	Ensembl Gene Model | MGI Sequence Detail	2456	C57BL/6J
transcript	ENSMUST00000193981	Ensembl | MGI Sequence Detail	554	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;