Rpl6l Pseudogene Detail

Summary

• Symbol
  Rpl6l
• Name
  ribosomal protein L6-like
• Synonyms
  Gm5428

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647789
  NCBI Gene: 432502
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr10:110961712-110962582 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 58.17 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  172 from dbSNP Build 142
• Strain Annotations
  15

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647789	pseudogene	Chr10:110961697-110962641 (+)
129S1/SvImJ	ENSMUSG00200010959	pseudogene	Chr10:107379267-107380137 (+)
A/J	ENSMUSG00195008459	pseudogene	Chr10:107794667-107795537 (+)
AKR/J	ENSMUSG00220025992	pseudogene	Chr10:107375822-107376692 (+)
BALB/cJ	ENSMUSG00180024489	pseudogene	Chr10:107814171-107815041 (+)
C3H/HeJ	ENSMUSG00175016095	pseudogene	Chr10:107742599-107743469 (+)
C57BL/6NJ	ENSMUSG00215012715	pseudogene	Chr10:107465519-107466389 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032946	protein coding gene	ChrX:8649294-8650428 (-)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210011757	pseudogene	Chr10:107613992-107614862 (+)
DBA/2J	ENSMUSG00185025076	pseudogene	Chr10:107732557-107733427 (+)
FVB/NJ	ENSMUSG00205010754	pseudogene	Chr10:107237346-107238216 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230013168	pseudogene	Chr10:109688568-109689438 (+)
NOD/ShiLtJ	ENSMUSG00190020890	pseudogene	Chr10:107841631-107842501 (+)
NZO/HlLtJ	ENSMUSG00225017774	pseudogene	Chr10:113942861-113943731 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005010617	pseudogene	Chr10:107504745-107505615 (+)

Homology

• Gene Tree
  Rpl6l
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Rpl6l
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  20
• RefSeq
  2

• Ensembl
  ENSMUSG00000091086 (Evidence)
• NCBI Gene
  432502

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000091086	Ensembl Gene Model | MGI Sequence Detail	871	C57BL/6J
transcript	ENSMUST00000171120	Ensembl | MGI Sequence Detail	871	Not Applicable
polypeptide	XP_036012022	RefSeq | MGI Sequence Detail	309	C57BL/6J

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87