Gm6625 Pseudogene Detail

Summary

• Symbol
  Gm6625
• Name
  predicted gene 6625

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:3647663
  NCBI Gene: 625801
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:89873415-89873686 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, 43.51 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  149 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647663	pseudogene	Chr8:89872912-89874737 (-)
129S1/SvImJ	ENSMUSG00200017747	pseudogene	Chr8:84226269-84226531 (-)
A/J	ENSMUSG00195030033	pseudogene	Chr8:84600660-84600931 (-)
AKR/J	ENSMUSG00220041269	pseudogene	Chr8:84625368-84625630 (-)
BALB/cJ	ENSMUSG00180025829	pseudogene	Chr8:84429913-84430175 (-)
C3H/HeJ	ENSMUSG00175029384	pseudogene	Chr8:84539415-84539686 (-)
C57BL/6NJ	ENSMUSG00215035371	pseudogene	Chr8:84140923-84141194 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005017804	pseudogene	Chr8:83997687-83997961 (-)
CBA/J	ENSMUSG00210036054	pseudogene	Chr8:84501890-84502152 (-)
DBA/2J	ENSMUSG00185039034	pseudogene	Chr8:90610510-90610772 (-)
FVB/NJ	ENSMUSG00205017575	pseudogene	Chr8:83557726-83557988 (-)
JF1/MsJ	ENSUMUG00000044580	pseudogene	Chr8:92943144-92943415 (-)
LP/J	ENSMUSG00230031569	pseudogene	Chr8:94222985-94223247 (-)
NOD/ShiLtJ	ENSMUSG00190016088	pseudogene	Chr8:84591183-84591445 (-)
NZO/HlLtJ	ENSMUSG00225041032	pseudogene	Chr8:97627077-97627339 (-)
PWK/PhJ	ENSLUMG00010042544	pseudogene	Chr8:84247989-84248260 (-)
SPRET/EiJ	ENSMSPG00010029917	pseudogene	Chr8:86179414-86179679 (-)
WSB/EiJ	ENSIUOG00005020011	pseudogene	Chr8:85321758-85322020 (-)

Homology

• Gene Tree
  Gm6625
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm6625
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2

• Ensembl
  ENSMUSG00000094790 (Evidence)
• NCBI Gene
  625801

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000094790	Ensembl Gene Model | MGI Sequence Detail	272	C57BL/6J
transcript	ENSMUST00000177870	Ensembl | MGI Sequence Detail	272	Not Applicable
polypeptide	XP_036010327	RefSeq | MGI Sequence Detail	106	C57BL/6J

References

• Summaries
  All 35

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Gm6625:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr82391	Chr8:89873876-89873879 (-)	-192 bp