Rpl21-ps1 Pseudogene Detail

Summary

• Symbol
  Rpl21-ps1
• Name
  ribosomal protein 21, pseudogene 1
• Synonyms
  Gm5534

• Feature Type
  pseudogene
• IDs
  MGI:3647596
  NCBI Gene: 433387
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:184349445-184349924 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 88.78 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  58 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3647596	pseudogene	Chr1:184349412-184349928 (+)
129S1/SvImJ	no annotation
A/J	MGP_AJ_G0010456	pseudogene	Chr1:183498933-183499412 (+)
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0009379	pseudogene	Chr1:174499718-174500196 (+)
CAST/EiJ	MGP_CASTEiJ_G0010181	pseudogene	Chr1:189158891-189159370 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	MGP_FVBNJ_G0010384	pseudogene	Chr1:180354379-180354858 (+)
LP/J	MGP_LPJ_G0010449	pseudogene	Chr1:192461691-192462170 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	MGP_PWKPhJ_G0010084	pseudogene	Chr1:181454531-181455139 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009897	pseudogene	Chr1:187716017-187718317 (+)
WSB/EiJ	MGP_WSBEiJ_G0010252	pseudogene	Chr1:188929773-188930179 (+)

Homology

• Gene Tree
  Rpl21-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000102606 (Evidence)
• NCBI Gene
  433387

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102606	Ensembl Gene Model | MGI Sequence Detail	480	C57BL/6J
transcript	ENSMUST00000193804	Ensembl | MGI Sequence Detail	480	Not Applicable

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 5
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;