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Gm5342 Pseudogene Detail
Summary
  • Symbol
    Gm5342
  • Name
    predicted gene 5342
  • Feature Type
    pseudogene
  • IDs
    MGI:3647517
    NCBI Gene: 384741
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr7:69209884-69210886 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 7, 38.00 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    21 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647517
pseudogene Chr7:69209866-69211086 (+)
129S1/SvImJ MGP_129S1SvImJ_G0013927
pseudogene Chr7:70569651-70570653 (+)
A/J MGP_AJ_G0013945
pseudogene Chr7:69077813-69078815 (+)
AKR/J MGP_AKRJ_G0013879
pseudogene Chr7:70519709-70520711 (+)
BALB/cJ MGP_BALBcJ_G0013901
pseudogene Chr7:68823756-68824758 (+)
C3H/HeJ MGP_C3HHeJ_G0013736
pseudogene Chr7:71246494-71247496 (+)
C57BL/6NJ MGP_C57BL6NJ_G0014335
pseudogene Chr7:73523578-73524580 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0012186
pseudogene Chr7:71899378-71900389 (+)
CAST/EiJ MGP_CASTEiJ_G0013396
pseudogene Chr7:61980349-61981350 (+)
CBA/J MGP_CBAJ_G0013717
pseudogene Chr7:75852932-75853934 (+)
DBA/2J MGP_DBA2J_G0013796
pseudogene Chr7:67772915-67773913 (+)
FVB/NJ MGP_FVBNJ_G0013796
pseudogene Chr7:67891510-67892508 (+)
LP/J MGP_LPJ_G0013871
pseudogene Chr7:71769332-71770330 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0013822
pseudogene Chr7:76061261-76062263 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0014295
pseudogene Chr7:69928376-69929374 (+)
PWK/PhJ MGP_PWKPhJ_G0013210
pseudogene Chr7:60846556-60847558 (+)
SPRET/EiJ MGP_SPRETEiJ_G0012976
pseudogene Chr7:56955272-56956223 (+)
WSB/EiJ MGP_WSBEiJ_G0013459
pseudogene Chr7:70266367-70267369 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Gm5342
  • Find Mice (IMSR)
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000098017 Ensembl Gene Model | MGI Sequence Detail 1003 C57BL/6J ±  kb
transcript ENSMUST00000181982 Ensembl | MGI Sequence Detail 1003 Not Applicable  
For the selected sequence
References
more
  • Summaries
    All 13
    Phenotypes 9
  • Earliest
    J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
  • Latest
    J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
06/23/2020
MGI 6.15
The Jackson Laboratory