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Trim43c Gene Detail
Summary
  • Symbol
    Trim43c
  • Name
    tripartite motif-containing 43C
  • Synonyms
    Trim43
  • Feature Type
    protein coding gene
  • IDs
    MGI:3647365
    NCBI Gene: 666731
  • Alliance
Location &
Maps
more
  • Sequence Map
    Chr9:88839164-88848190 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 9, 47.24 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    26 from dbSNP Build 142
  • Strain Annotations
    9
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3647365
protein coding gene Chr9:88839164-88848190 (+)
129S1/SvImJ MGP_129S1SvImJ_G0035112
protein coding gene Chr9:89465696-89473228 (+)
A/J MGP_AJ_G0035095
protein coding gene Chr9:86629157-86640690 (+)
AKR/J MGP_AKRJ_G0035026
protein coding gene Chr9:88678796-88688741 (+)
BALB/cJ MGP_BALBcJ_G0035083
protein coding gene Chr9:86238165-86262858 (+)
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0035608
protein coding gene Chr9:92436444-92446498 (-)
CAROLI/EiJ no annotation
CAST/EiJ no annotation
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0034873
protein coding gene Chr9:85193901-85203431 (+)
LP/J MGP_LPJ_G0035005
protein coding gene Chr9:89667668-89683234 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0035627
protein coding gene Chr9:89112274-89131213 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • Literature Summary
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 666731 NCBI Gene Model | MGI Sequence Detail 9027 C57BL/6J ±  kb
transcript NM_001177858 RefSeq | MGI Sequence Detail 1990 C57BL/6  
polypeptide P86449 UniProt | EBI | MGI Sequence Detail 446 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 2
    Primer pair 2
References
more
  • Summaries
    All 12
    Developmental Gene Expression 1
    Gene Ontology 3
    Phenotypes 2
  • Earliest
    J:154127 Stanghellini I, et al., Trim43a, Trim43b, and Trim43c: Novel mouse genes expressed specifically in mouse preimplantation embryos. Gene Expr Patterns. 2009 Dec;9(8):595-602
  • Latest
    J:265628 Gaudet P, et al., Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Brief Bioinform. 2011 Sep;12(5):449-62

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/04/2020
MGI 6.15
The Jackson Laboratory